CircRNA Information

General Information
circRNA Basic Information
CircID chr7:140340692|140340867
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGCCTTCTGGGACTCAAGCAATTTTCCCACTGCAGCCTCCCAAGTAGCTTGGACTGCAGGTACCCACCACCATGCCCAGCTAATTTTTGTATTTTTTTTGTAGAGACAGGGTTTCACCACATTGCCCAGACTGGTCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:140340692|140340867 hsa-miR-10a-5p 0 0 1
chr7:140340692|140340867 hsa-miR-10a-3p 0 0 1
chr7:140340692|140340867 hsa-miR-10b-5p 0 0 1
chr7:140340692|140340867 hsa-miR-10b-3p 0 0 1
chr7:140340692|140340867 hsa-miR-593-5p 0 0 1
chr7:140340692|140340867 hsa-miR-593-3p 0 0 1
chr7:140340692|140340867 hsa-miR-612 1 1 1
chr7:140340692|140340867 hsa-miR-622 0 0 1
chr7:140340692|140340867 hsa-miR-627-5p 0 0 1
chr7:140340692|140340867 hsa-miR-627-3p 0 0 1
chr7:140340692|140340867 hsa-miR-890 0 0 1
chr7:140340692|140340867 hsa-miR-541-5p 0 0 1
chr7:140340692|140340867 hsa-miR-541-3p 0 0 1
chr7:140340692|140340867 hsa-miR-665 0 1 1
chr7:140340692|140340867 hsa-miR-940 0 0 1
chr7:140340692|140340867 hsa-miR-302f 0 0 1
chr7:140340692|140340867 hsa-miR-1827 0 0 1
chr7:140340692|140340867 hsa-miR-1225-3p 0 0 1
chr7:140340692|140340867 hsa-miR-769-5p 0 0 1
chr7:140340692|140340867 hsa-miR-1283 0 0 1
chr7:140340692|140340867 hsa-miR-485-5p 0 0 1
chr7:140340692|140340867 hsa-miR-339-5p 0 1 1
chr7:140340692|140340867 hsa-miR-1225-5p 0 0 1
chr7:140340692|140340867 hsa-miR-654-5p 0 0 1
chr7:140340692|140340867 hsa-miR-876-3p 0 0 1
chr7:140340692|140340867 hsa-miR-455-3p 0 0 1
chr7:140340692|140340867 hsa-miR-1233 0 0 1
chr7:140340692|140340867 hsa-miR-323-5p 0 0 1
chr7:140340692|140340867 hsa-miR-1285 0 0 1
chr7:140340692|140340867 hsa-miR-608 1 0 0
chr7:140340692|140340867 hsa-miR-762 1 0 0
chr7:140340692|140340867 hsa-miR-1268a 1 1 0
chr7:140340692|140340867 hsa-miR-2861 1 0 0
chr7:140340692|140340867 hsa-miR-3147 1 1 0
chr7:140340692|140340867 hsa-miR-1268b 1 1 0
chr7:140340692|140340867 hsa-miR-4421 0 1 0
chr7:140340692|140340867 hsa-miR-4430 1 0 0
chr7:140340692|140340867 hsa-miR-4505 1 0 0
chr7:140340692|140340867 hsa-miR-1587 1 0 0
chr7:140340692|140340867 hsa-miR-5787 1 0 0
chr7:140340692|140340867 hsa-miR-6086 1 0 0
chr7:140340692|140340867 hsa-miR-6860 0 1 0
chr7:140340692|140340867 hsa-miR-17-3p 0 1 0
chr7:140340692|140340867 hsa-miR-6840-3p 0 1 0
chr7:140340692|140340867 hsa-miR-6861-5p 1 0 0
chr7:140340692|140340867 hsa-miR-7106-5p 1 0 0
chr7:140340692|140340867 hsa-miR-4687-3p 1 0 0
chr7:140340692|140340867 hsa-miR-6854-5p 0 1 0
chr7:140340692|140340867 hsa-miR-6799-5p 1 0 0
chr7:140340692|140340867 hsa-miR-4786-5p 0 1 0
chr7:140340692|140340867 hsa-miR-6089 1 0 0
chr7:140340692|140340867 hsa-miR-3192-5p 1 0 0
chr7:140340692|140340867 hsa-miR-4722-5p 0 1 0
chr7:140340692|140340867 hsa-miR-6762-3p 1 0 0
chr7:140340692|140340867 hsa-miR-6821-5p 1 0 0
chr7:140340692|140340867 hsa-miR-1229-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6771-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6732-3p 0 1 0
chr7:140340692|140340867 hsa-miR-10400-5p 1 0 0
chr7:140340692|140340867 hsa-miR-1233-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6769b-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6778-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6775-5p 1 0 0
chr7:140340692|140340867 hsa-miR-5001-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6803-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6751-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6774-5p 1 0 0
chr7:140340692|140340867 hsa-miR-3620-5p 1 0 0
chr7:140340692|140340867 hsa-miR-5189-5p 0 1 0
chr7:140340692|140340867 hsa-miR-6862-5p 0 1 0
chr7:140340692|140340867 hsa-miR-328-5p 1 0 0
chr7:140340692|140340867 hsa-miR-4649-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6846-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6848-5p 1 0 0
chr7:140340692|140340867 hsa-miR-6883-5p 1 0 0
chr7:140340692|140340867 hsa-miR-3187-5p 0 1 0
chr7:140340692|140340867 hsa-miR-939-5p 1 0 0
chr7:140340692|140340867 hsa-miR-4769-5p 1 0 0
chr7:140340692|140340867 hsa-miR-1285-3p 0 1 0
chr7:140340692|140340867 hsa-miR-6773-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:140340692|140340867
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MGLKQFSHCSLPSSLDCRYPPPCPANFCIFFVETGFHHIAQTGLKLLGSSDPPAS
Nucleotide Sequence CTGGGACTCAAGCAATTTTCCCACTGCAGCCTCCCAAGTAGCTTGGACTGCAGGTACCCACCACCATGCCCAGCTAATTTTTGTATTTTTTTTGTAGAGACAGGGTTTCACCACATTGCCCAGACTGGTCTCAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCA
CircID chr7:140340692|140340867
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MGNVVKPCLYKKNTKISWAWWWVPAVQATWEAAVGKLLESQKAE
Nucleotide Sequence CTGGGCAATGTGGTGAAACCCTGTCTCTACAAAAAAAATACAAAAATTAGCTGGGCATGGTGGTGGGTACCTGCAGTCCAAGCTACTTGGGAGGCTGCAGTGGGAAAATTGCTTGAGTCCCAGAAGGCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab