CircRNA Information

General Information
circRNA Basic Information
CircID chr7:141652814|141653050
Strand -
CircType exon
Host Gene ENSG00000006530.14;
Algorism CIRI2;
Sequence AGTGAGGAGTATGAAGCGATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCACCCAGTGAGCAGCAGAAGACAAGCACTCTGAGACCACACTTTAGGCCACCGGTGGGACCAAAAGGGAACAGGTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:141652814|141653050 hsa-miR-17-5p 0 0 1
chr7:141652814|141653050 hsa-miR-17-3p 0 0 1
chr7:141652814|141653050 hsa-miR-20a-5p 0 0 1
chr7:141652814|141653050 hsa-miR-20a-3p 0 0 1
chr7:141652814|141653050 hsa-miR-93-5p 0 0 1
chr7:141652814|141653050 hsa-miR-93-3p 0 0 1
chr7:141652814|141653050 hsa-miR-106a-5p 0 0 1
chr7:141652814|141653050 hsa-miR-106a-3p 0 0 1
chr7:141652814|141653050 hsa-miR-204-5p 0 0 1
chr7:141652814|141653050 hsa-miR-204-3p 0 0 1
chr7:141652814|141653050 hsa-miR-211-5p 0 0 1
chr7:141652814|141653050 hsa-miR-211-3p 0 0 1
chr7:141652814|141653050 hsa-miR-106b-5p 0 0 1
chr7:141652814|141653050 hsa-miR-106b-3p 0 0 1
chr7:141652814|141653050 hsa-miR-133b 0 0 1
chr7:141652814|141653050 hsa-miR-384 0 0 1
chr7:141652814|141653050 hsa-miR-20b-5p 0 0 1
chr7:141652814|141653050 hsa-miR-20b-3p 0 0 1
chr7:141652814|141653050 hsa-miR-511-5p 0 0 1
chr7:141652814|141653050 hsa-miR-511-3p 0 0 1
chr7:141652814|141653050 hsa-miR-520f-5p 0 0 1
chr7:141652814|141653050 hsa-miR-520f-3p 0 0 1
chr7:141652814|141653050 hsa-miR-519d-5p 0 0 1
chr7:141652814|141653050 hsa-miR-519d-3p 0 0 1
chr7:141652814|141653050 hsa-miR-595 0 0 1
chr7:141652814|141653050 hsa-miR-623 0 0 1
chr7:141652814|141653050 hsa-miR-636 0 1 1
chr7:141652814|141653050 hsa-miR-1301-5p 0 0 1
chr7:141652814|141653050 hsa-miR-1301-3p 0 0 1
chr7:141652814|141653050 hsa-miR-874-5p 0 0 1
chr7:141652814|141653050 hsa-miR-874-3p 0 0 1
chr7:141652814|141653050 hsa-miR-939-5p 0 0 1
chr7:141652814|141653050 hsa-miR-939-3p 0 0 1
chr7:141652814|141653050 hsa-miR-1178-5p 0 0 1
chr7:141652814|141653050 hsa-miR-1178-3p 0 0 1
chr7:141652814|141653050 hsa-miR-1236-5p 0 0 1
chr7:141652814|141653050 hsa-miR-1236-3p 0 0 1
chr7:141652814|141653050 hsa-miR-1208 0 0 1
chr7:141652814|141653050 hsa-miR-1293 0 0 1
chr7:141652814|141653050 hsa-miR-1827 0 0 1
chr7:141652814|141653050 hsa-miR-146b-3p 0 0 1
chr7:141652814|141653050 hsa-miR-1184 0 1 1
chr7:141652814|141653050 hsa-miR-1224-3p 0 0 1
chr7:141652814|141653050 hsa-miR-767-3p 0 0 1
chr7:141652814|141653050 hsa-miR-769-3p 0 0 1
chr7:141652814|141653050 hsa-miR-485-3p 0 0 1
chr7:141652814|141653050 hsa-miR-509-3-5p 0 0 1
chr7:141652814|141653050 hsa-miR-509-5p 0 0 1
chr7:141652814|141653050 hsa-miR-450b-3p 0 0 1
chr7:141652814|141653050 hsa-miR-516a-3p 0 0 1
chr7:141652814|141653050 hsa-miR-1260 0 0 1
chr7:141652814|141653050 hsa-miR-1280 0 0 1
chr7:141652814|141653050 hsa-miR-133a 0 0 1
chr7:141652814|141653050 hsa-miR-365 0 0 1
chr7:141652814|141653050 hsa-miR-608 1 1 0
chr7:141652814|141653050 hsa-miR-637 1 1 0
chr7:141652814|141653050 hsa-miR-638 1 0 0
chr7:141652814|141653050 hsa-miR-762 1 0 0
chr7:141652814|141653050 hsa-miR-1183 1 1 0
chr7:141652814|141653050 hsa-miR-2117 0 1 0
chr7:141652814|141653050 hsa-miR-4425 0 1 0
chr7:141652814|141653050 hsa-miR-4511 0 1 0
chr7:141652814|141653050 hsa-miR-4651 1 0 0
chr7:141652814|141653050 hsa-miR-4656 1 0 0
chr7:141652814|141653050 hsa-miR-5787 1 0 0
chr7:141652814|141653050 hsa-miR-6081 0 1 0
chr7:141652814|141653050 hsa-miR-8089 1 1 0
chr7:141652814|141653050 hsa-miR-26b-3p 0 1 0
chr7:141652814|141653050 hsa-miR-92a-2-5p 0 1 0
chr7:141652814|141653050 hsa-miR-3194-3p 0 1 0
chr7:141652814|141653050 hsa-miR-6765-5p 1 0 0
chr7:141652814|141653050 hsa-miR-6728-5p 0 1 0
chr7:141652814|141653050 hsa-miR-8071 1 0 0
chr7:141652814|141653050 hsa-miR-8069 1 0 0
chr7:141652814|141653050 hsa-miR-3151-5p 0 1 0
chr7:141652814|141653050 hsa-miR-1343-3p 0 1 0
chr7:141652814|141653050 hsa-miR-6786-5p 1 0 0
chr7:141652814|141653050 hsa-miR-6852-5p 1 1 0
chr7:141652814|141653050 hsa-miR-6739-3p 0 1 0
chr7:141652814|141653050 hsa-miR-1306-5p 0 1 0
chr7:141652814|141653050 hsa-miR-450a-2-3p 0 1 0
chr7:141652814|141653050 hsa-miR-4776-3p 0 1 0
chr7:141652814|141653050 hsa-miR-2276-5p 0 1 0
chr7:141652814|141653050 hsa-miR-4649-3p 0 1 0
chr7:141652814|141653050 hsa-miR-6800-3p 1 0 0
chr7:141652814|141653050 hsa-miR-4763-3p 1 0 0
chr7:141652814|141653050 hsa-miR-6737-5p 1 0 0
chr7:141652814|141653050 hsa-miR-6756-5p 1 1 0
chr7:141652814|141653050 hsa-miR-4700-5p 0 1 0
chr7:141652814|141653050 hsa-miR-4667-5p 0 1 0
chr7:141652814|141653050 hsa-miR-6791-5p 1 1 0
chr7:141652814|141653050 hsa-miR-4768-5p 0 1 0
chr7:141652814|141653050 hsa-miR-520d-3p 0 1 0
chr7:141652814|141653050 hsa-miR-5006-3p 0 1 0
chr7:141652814|141653050 hsa-miR-301a-5p 0 1 0
chr7:141652814|141653050 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:141652814|141653050
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MPVEVKLLPRKLQFFCDPRKREQMLTSPTQ
Nucleotide Sequence ATGCCTGTGGAGGTGAAACTGCTCCCCAGGAAGCTGCAGTTCTTCTGTGATCCTAGGAAGAGAGAACAGATGCTCACAAGCCCCACCCAGTGA
CircID chr7:141652814|141653050
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MRPHFRPPVGPKGNRCLSHPNSVVRGSPGHFHGKY
Nucleotide Sequence CTGAGACCACACTTTAGGCCACCGGTGGGACCAAAAGGGAACAGGTGCCTCAGCCATCCCAACAGTGTCGTCAGAGGGTCCCCAGGGCATTTTCATGGCAAGTAC
CircID chr7:141652814|141653050
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MTTLLGWLRHLFPFGPTGGLKCGLRVLVFCCSLGGACEHLFSLPRITEELQLPGEQFHLHRHRFILLT
Nucleotide Sequence CTGACGACACTGTTGGGATGGCTGAGGCACCTGTTCCCTTTTGGTCCCACCGGTGGCCTAAAGTGTGGTCTCAGAGTGCTTGTCTTCTGCTGCTCACTGGGTGGGGCTTGTGAGCATCTGTTCTCTCTTCCTAGGATCACAGAAGAACTGCAGCTTCCTGGGGAGCAGTTTCACCTCCACAGGCATCGCTTCATACTCCTCACT
CircID chr7:141652814|141653050
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MSSAAHWVGLVSICSLFLGSQKNCSFLGSSFTSTGIASYSS
Nucleotide Sequence TTGTCTTCTGCTGCTCACTGGGTGGGGCTTGTGAGCATCTGTTCTCTCTTCCTAGGATCACAGAAGAACTGCAGCTTCCTGGGGAGCAGTTTCACCTCCACAGGCATCGCTTCATACTCCTCA
CircID chr7:141652814|141653050
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MKMPWGPSDDTVGMAEAPVPFWSHRWPKVWSQSACLLLLTGWGL
Nucleotide Sequence ATGAAAATGCCCTGGGGACCCTCTGACGACACTGTTGGGATGGCTGAGGCACCTGTTCCCTTTTGGTCCCACCGGTGGCCTAAAGTGTGGTCTCAGAGTGCTTGTCTTCTGCTGCTCACTGGGTGGGGCTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab