CircRNA Information

General Information
circRNA Basic Information
CircID chr7:141660484|141660677
Strand -
CircType exon
Host Gene ENSG00000257093.5;
Algorism CIRI2;
Sequence AGGAACTTCATTCTCACCCTGCTATGTTTACACCAGCACTTCTGAGCTTGCAGTTAAAACTGCAGTGTTTGCATATAGAAGGCTCAGAGCAGAAATGCCTCAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAAAAAGGAGGTCTTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:141660484|141660677 hsa-miR-30a-5p 0 0 1
chr7:141660484|141660677 hsa-miR-30a-3p 0 0 1
chr7:141660484|141660677 hsa-miR-30d-5p 0 0 1
chr7:141660484|141660677 hsa-miR-30d-3p 0 0 1
chr7:141660484|141660677 hsa-miR-30b-5p 0 0 1
chr7:141660484|141660677 hsa-miR-30b-3p 0 0 1
chr7:141660484|141660677 hsa-miR-141-5p 0 0 1
chr7:141660484|141660677 hsa-miR-141-3p 0 0 1
chr7:141660484|141660677 hsa-miR-200a-5p 0 0 1
chr7:141660484|141660677 hsa-miR-200a-3p 0 0 1
chr7:141660484|141660677 hsa-miR-302a-5p 0 0 1
chr7:141660484|141660677 hsa-miR-302a-3p 0 0 1
chr7:141660484|141660677 hsa-miR-30e-5p 0 0 1
chr7:141660484|141660677 hsa-miR-30e-3p 0 0 1
chr7:141660484|141660677 hsa-miR-302b-5p 0 0 1
chr7:141660484|141660677 hsa-miR-302b-3p 0 0 1
chr7:141660484|141660677 hsa-miR-302c-5p 0 0 1
chr7:141660484|141660677 hsa-miR-302c-3p 0 0 1
chr7:141660484|141660677 hsa-miR-302d-5p 0 0 1
chr7:141660484|141660677 hsa-miR-302d-3p 0 0 1
chr7:141660484|141660677 hsa-miR-372-5p 0 0 1
chr7:141660484|141660677 hsa-miR-372-3p 0 0 1
chr7:141660484|141660677 hsa-miR-373-5p 0 0 1
chr7:141660484|141660677 hsa-miR-373-3p 0 0 1
chr7:141660484|141660677 hsa-miR-488-5p 0 0 1
chr7:141660484|141660677 hsa-miR-488-3p 0 0 1
chr7:141660484|141660677 hsa-miR-520e-5p 0 0 1
chr7:141660484|141660677 hsa-miR-520e-3p 0 0 1
chr7:141660484|141660677 hsa-miR-520b-5p 0 0 1
chr7:141660484|141660677 hsa-miR-520b-3p 0 0 1
chr7:141660484|141660677 hsa-miR-580-5p 0 0 1
chr7:141660484|141660677 hsa-miR-580-3p 0 0 1
chr7:141660484|141660677 hsa-miR-708-5p 0 0 1
chr7:141660484|141660677 hsa-miR-708-3p 0 0 1
chr7:141660484|141660677 hsa-miR-877-5p 0 0 1
chr7:141660484|141660677 hsa-miR-877-3p 0 0 1
chr7:141660484|141660677 hsa-miR-1299 1 0 1
chr7:141660484|141660677 hsa-miR-1304-5p 0 0 1
chr7:141660484|141660677 hsa-miR-1304-3p 0 0 1
chr7:141660484|141660677 hsa-miR-302e 0 0 1
chr7:141660484|141660677 hsa-miR-1197 0 0 1
chr7:141660484|141660677 hsa-miR-1827 0 0 1
chr7:141660484|141660677 hsa-miR-512-3p 0 0 1
chr7:141660484|141660677 hsa-miR-28-5p 0 0 1
chr7:141660484|141660677 hsa-miR-767-3p 0 0 1
chr7:141660484|141660677 hsa-miR-875-3p 0 0 1
chr7:141660484|141660677 hsa-miR-520d-3p 0 0 1
chr7:141660484|141660677 hsa-miR-509-3-5p 0 0 1
chr7:141660484|141660677 hsa-miR-509-5p 0 0 1
chr7:141660484|141660677 hsa-miR-520a-3p 0 0 1
chr7:141660484|141660677 hsa-miR-520c-3p 0 0 1
chr7:141660484|141660677 hsa-miR-30c 0 0 1
chr7:141660484|141660677 hsa-miR-138 0 0 1
chr7:141660484|141660677 hsa-miR-516b 0 0 1
chr7:141660484|141660677 hsa-miR-544 0 0 1
chr7:141660484|141660677 hsa-miR-346 1 0 0
chr7:141660484|141660677 hsa-miR-422a 1 0 0
chr7:141660484|141660677 hsa-miR-622 1 0 0
chr7:141660484|141660677 hsa-miR-2110 1 0 0
chr7:141660484|141660677 hsa-miR-4270 1 0 0
chr7:141660484|141660677 hsa-miR-4686 1 0 0
chr7:141660484|141660677 hsa-miR-4706 1 0 0
chr7:141660484|141660677 hsa-miR-4739 1 0 0
chr7:141660484|141660677 hsa-miR-6127 1 0 0
chr7:141660484|141660677 hsa-miR-138-5p 1 0 0
chr7:141660484|141660677 hsa-miR-4433b-3p 1 0 0
chr7:141660484|141660677 hsa-miR-6734-5p 1 0 0
chr7:141660484|141660677 hsa-miR-504-3p 1 0 0
chr7:141660484|141660677 hsa-miR-4433a-3p 1 0 0
chr7:141660484|141660677 hsa-miR-6510-5p 1 0 0
chr7:141660484|141660677 hsa-miR-3692-5p 1 0 0
chr7:141660484|141660677 hsa-miR-6833-5p 1 0 0
chr7:141660484|141660677 hsa-miR-4653-3p 1 0 0
chr7:141660484|141660677 hsa-miR-6824-5p 1 0 0
chr7:141660484|141660677 hsa-miR-3162-5p 1 0 0
chr7:141660484|141660677 hsa-miR-4763-3p 1 0 0
chr7:141660484|141660677 hsa-miR-6726-5p 1 0 0
chr7:141660484|141660677 hsa-miR-6813-5p 1 0 0
chr7:141660484|141660677 hsa-miR-939-5p 1 0 0
chr7:141660484|141660677 hsa-miR-6876-5p 1 0 0
chr7:141660484|141660677 hsa-miR-6750-5p 1 0 0
chr7:141660484|141660677 hsa-miR-769-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:141660484|141660677
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MFTPALLSLQLKLQCLHIEGSEQKCLKQLLPADSLIPEKGGLLVSSRRIRPFLSLLL
Nucleotide Sequence ATGTTTACACCAGCACTTCTGAGCTTGCAGTTAAAACTGCAGTGTTTGCATATAGAAGGCTCAGAGCAGAAATGCCTCAAACAGCTCCTTCCGGCAGATTCCCTAATTCCAGAAAAAGGAGGTCTTCTTGTGTCCTCTAGGAGAATCAGACCTTTCCTTTCACTTCTACTC
CircID chr7:141660484|141660677
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MILLEDTRRPPFSGIRESAGRSCLRHFCSEPSICKHCSFNCKLRSAGVNIAG
Nucleotide Sequence CTGATTCTCCTAGAGGACACAAGAAGACCTCCTTTTTCTGGAATTAGGGAATCTGCCGGAAGGAGCTGTTTGAGGCATTTCTGCTCTGAGCCTTCTATATGCAAACACTGCAGTTTTAACTGCAAGCTCAGAAGTGCTGGTGTAAACATAGCAGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab