CircRNA Information

General Information
circRNA Basic Information
CircID chr7:141743665|141743989
Strand +
CircType exon
Host Gene ENSG00000106028.9;
Algorism CIRI2;
Sequence CCCTTTTTCACATATTGATATGCCACGTCTCTGAGGCCTGGCCGGAATACTGATATTCTGTGCCATGTTGTCTTTTGACTGACATCACCTAAATCATAAAAATAGGAAATTGGTTACAAATGCCAACAGACAACATGCCCAGGAAAACCAATGTCACGATTTCTAAGAGAACAAACAGAATGAAAGACAGATCTTGTTTAAAGTGGTTTATCTCTAAATTAGATAACTGGCAATAAATAATATCTATTTATTGCTGATAAAATTAAAACCCCAGTCTTTTGTACTCACCCAGTTGGTAAACTTCACTATCCCCTGATCGCCACAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:141743665|141743989 hsa-miR-183-5p 0 0 1
chr7:141743665|141743989 hsa-miR-183-3p 0 0 1
chr7:141743665|141743989 hsa-miR-223-5p 0 0 1
chr7:141743665|141743989 hsa-miR-223-3p 0 0 1
chr7:141743665|141743989 hsa-miR-137-5p 0 0 1
chr7:141743665|141743989 hsa-miR-137-3p 0 0 1
chr7:141743665|141743989 hsa-miR-375-5p 0 0 1
chr7:141743665|141743989 hsa-miR-375-3p 0 0 1
chr7:141743665|141743989 hsa-miR-384 0 0 1
chr7:141743665|141743989 hsa-miR-511-5p 0 0 1
chr7:141743665|141743989 hsa-miR-511-3p 0 0 1
chr7:141743665|141743989 hsa-miR-545-5p 0 0 1
chr7:141743665|141743989 hsa-miR-545-3p 0 0 1
chr7:141743665|141743989 hsa-miR-577 0 0 1
chr7:141743665|141743989 hsa-miR-612 0 1 1
chr7:141743665|141743989 hsa-miR-632 0 0 1
chr7:141743665|141743989 hsa-miR-656-5p 0 0 1
chr7:141743665|141743989 hsa-miR-656-3p 0 0 1
chr7:141743665|141743989 hsa-miR-1298-5p 0 0 1
chr7:141743665|141743989 hsa-miR-1298-3p 0 0 1
chr7:141743665|141743989 hsa-miR-1180-5p 0 0 1
chr7:141743665|141743989 hsa-miR-1180-3p 0 0 1
chr7:141743665|141743989 hsa-miR-1231 0 0 1
chr7:141743665|141743989 hsa-miR-1202 0 0 1
chr7:141743665|141743989 hsa-miR-1303 0 0 1
chr7:141743665|141743989 hsa-miR-1256 0 0 1
chr7:141743665|141743989 hsa-miR-1262 0 1 1
chr7:141743665|141743989 hsa-miR-1267 0 0 1
chr7:141743665|141743989 hsa-miR-361-5p 0 0 1
chr7:141743665|141743989 hsa-miR-337-3p 0 0 1
chr7:141743665|141743989 hsa-miR-590-3p 0 0 1
chr7:141743665|141743989 hsa-miR-1285 0 0 1
chr7:141743665|141743989 hsa-miR-1268b 1 0 0
chr7:141743665|141743989 hsa-miR-4450 1 0 0
chr7:141743665|141743989 hsa-miR-4463 1 1 0
chr7:141743665|141743989 hsa-miR-3689e 1 0 0
chr7:141743665|141743989 hsa-miR-3689f 1 1 0
chr7:141743665|141743989 hsa-miR-4507 1 0 0
chr7:141743665|141743989 hsa-miR-4525 1 0 0
chr7:141743665|141743989 hsa-miR-4651 1 0 0
chr7:141743665|141743989 hsa-miR-5698 1 0 0
chr7:141743665|141743989 hsa-miR-6860 1 0 0
chr7:141743665|141743989 hsa-miR-6863 0 1 0
chr7:141743665|141743989 hsa-miR-8074 1 0 0
chr7:141743665|141743989 hsa-miR-12128 1 1 0
chr7:141743665|141743989 hsa-miR-150-3p 1 0 0
chr7:141743665|141743989 hsa-miR-143-3p 0 1 0
chr7:141743665|141743989 hsa-miR-504-3p 1 0 0
chr7:141743665|141743989 hsa-miR-6510-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6728-5p 1 0 0
chr7:141743665|141743989 hsa-miR-139-3p 1 0 0
chr7:141743665|141743989 hsa-miR-4755-3p 0 1 0
chr7:141743665|141743989 hsa-miR-5589-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6776-5p 1 0 0
chr7:141743665|141743989 hsa-miR-7108-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6793-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6732-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6798-5p 1 0 0
chr7:141743665|141743989 hsa-miR-1226-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6717-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6824-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6800-5p 0 1 0
chr7:141743665|141743989 hsa-miR-1225-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6818-5p 1 0 0
chr7:141743665|141743989 hsa-miR-598-5p 1 0 0
chr7:141743665|141743989 hsa-miR-4763-3p 1 0 0
chr7:141743665|141743989 hsa-miR-6769b-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6812-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6775-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6756-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6769a-5p 1 0 0
chr7:141743665|141743989 hsa-miR-4685-5p 1 0 0
chr7:141743665|141743989 hsa-miR-3187-5p 0 1 0
chr7:141743665|141743989 hsa-miR-6736-5p 1 1 0
chr7:141743665|141743989 hsa-miR-541-3p 1 0 0
chr7:141743665|141743989 hsa-miR-6766-5p 1 0 0
chr7:141743665|141743989 hsa-miR-7107-3p 0 1 0
chr7:141743665|141743989 hsa-miR-4757-5p 1 0 0
chr7:141743665|141743989 hsa-miR-330-5p 1 0 0
chr7:141743665|141743989 hsa-miR-6783-3p 0 1 0
chr7:141743665|141743989 hsa-miR-3689a-5p 1 0 0
chr7:141743665|141743989 hsa-miR-3689b-5p 1 0 0
chr7:141743665|141743989 hsa-miR-371b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:141743665|141743989
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MAINNIYLLLIKLKPQSFVLTQLVNFTIP
Nucleotide Sequence CTGGCAATAAATAATATCTATTTATTGCTGATAAAATTAAAACCCCAGTCTTTTGTACTCACCCAGTTGGTAAACTTCACTATCCCCTGA
CircID chr7:141743665|141743989
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MPTDNMPRKTNVTISKRTNRMKDRSCLKWFISKLDNWQ
Nucleotide Sequence ATGCCAACAGACAACATGCCCAGGAAAACCAATGTCACGATTTCTAAGAGAACAAACAGAATGAAAGACAGATCTTGTTTAAAGTGGTTTATCTCTAAATTAGATAACTGGCAATAA
CircID chr7:141743665|141743989
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MSFILFVLLEIVTLVFLGMLSVGICNQFPIFMI
Nucleotide Sequence CTGTCTTTCATTCTGTTTGTTCTCTTAGAAATCGTGACATTGGTTTTCCTGGGCATGTTGTCTGTTGGCATTTGTAACCAATTTCCTATTTTTATGATTTAG
CircID chr7:141743665|141743989
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MSVKRQHGTEYQYSGQASETWHINM
Nucleotide Sequence ATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCCTCAGAGACGTGGCATATCAATATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab