CircRNA Information

General Information
circRNA Basic Information
CircID chr7:142566179|142566474
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCCGATTAAAGCCAACTCCCCGTAGGTTCCTATGAATGGCAGAGTTGGGAGGGGCACTAAAAAATCCCCGTGGGAACTCATTCGATTTATCTTCTGTAGTTGTCATAGACTCCTCTTAGGTTCCTCTACTTCTAATCTTGGCCTCCCTCATTCTAGCCACCAACCCAGGGTCTACTCTCAATACAGAAGTCAGAGTGATCCTTTAGGTTAGATGTTGTCACTCGTCCACTAAACCATACAGTAGATTCCCGTTTCACTCAGAGAAAAGCCTACAGCCTGCATAGGCCTACGAGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:142566179|142566474 hsa-miR-150-5p 0 0 1
chr7:142566179|142566474 hsa-miR-150-3p 0 0 1
chr7:142566179|142566474 hsa-miR-345-5p 0 0 1
chr7:142566179|142566474 hsa-miR-345-3p 0 0 1
chr7:142566179|142566474 hsa-miR-425-5p 0 0 1
chr7:142566179|142566474 hsa-miR-425-3p 0 0 1
chr7:142566179|142566474 hsa-miR-376b-5p 0 0 1
chr7:142566179|142566474 hsa-miR-376b-3p 0 0 1
chr7:142566179|142566474 hsa-miR-519e-5p 0 0 1
chr7:142566179|142566474 hsa-miR-519e-3p 0 0 1
chr7:142566179|142566474 hsa-miR-504-5p 0 0 1
chr7:142566179|142566474 hsa-miR-504-3p 0 0 1
chr7:142566179|142566474 hsa-miR-571 0 0 1
chr7:142566179|142566474 hsa-miR-577 0 0 1
chr7:142566179|142566474 hsa-miR-584-5p 0 0 1
chr7:142566179|142566474 hsa-miR-584-3p 0 0 1
chr7:142566179|142566474 hsa-miR-617 0 0 1
chr7:142566179|142566474 hsa-miR-662 0 0 1
chr7:142566179|142566474 hsa-miR-411-5p 0 0 1
chr7:142566179|142566474 hsa-miR-411-3p 0 0 1
chr7:142566179|142566474 hsa-miR-877-5p 0 0 1
chr7:142566179|142566474 hsa-miR-877-3p 0 0 1
chr7:142566179|142566474 hsa-miR-1183 1 1 1
chr7:142566179|142566474 hsa-miR-1290 0 0 1
chr7:142566179|142566474 hsa-miR-1321 0 0 1
chr7:142566179|142566474 hsa-miR-542-5p 0 0 1
chr7:142566179|142566474 hsa-miR-188-3p 0 0 1
chr7:142566179|142566474 hsa-miR-299-5p 0 0 1
chr7:142566179|142566474 hsa-miR-515-3p 0 0 1
chr7:142566179|142566474 hsa-miR-1260 0 0 1
chr7:142566179|142566474 hsa-miR-376a 0 0 1
chr7:142566179|142566474 hsa-miR-371-3p 0 0 1
chr7:142566179|142566474 hsa-miR-549 0 0 1
chr7:142566179|142566474 hsa-miR-637 1 0 0
chr7:142566179|142566474 hsa-miR-921 1 0 0
chr7:142566179|142566474 hsa-miR-1202 1 0 0
chr7:142566179|142566474 hsa-miR-1295a 1 0 0
chr7:142566179|142566474 hsa-miR-3125 0 1 0
chr7:142566179|142566474 hsa-miR-3196 1 0 0
chr7:142566179|142566474 hsa-miR-4294 0 1 0
chr7:142566179|142566474 hsa-miR-4265 1 0 0
chr7:142566179|142566474 hsa-miR-3649 1 0 0
chr7:142566179|142566474 hsa-miR-3652 1 0 0
chr7:142566179|142566474 hsa-miR-3911 1 0 0
chr7:142566179|142566474 hsa-miR-4430 1 0 0
chr7:142566179|142566474 hsa-miR-4463 1 0 0
chr7:142566179|142566474 hsa-miR-4507 1 1 0
chr7:142566179|142566474 hsa-miR-4510 0 1 0
chr7:142566179|142566474 hsa-miR-4681 0 1 0
chr7:142566179|142566474 hsa-miR-4739 1 1 0
chr7:142566179|142566474 hsa-miR-4748 1 0 0
chr7:142566179|142566474 hsa-miR-5698 1 0 0
chr7:142566179|142566474 hsa-miR-6127 1 0 0
chr7:142566179|142566474 hsa-miR-6133 1 1 0
chr7:142566179|142566474 hsa-miR-12115 1 0 0
chr7:142566179|142566474 hsa-miR-6734-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6765-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6861-5p 1 0 0
chr7:142566179|142566474 hsa-miR-7106-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6825-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6510-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6728-5p 1 0 0
chr7:142566179|142566474 hsa-miR-1236-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6089 1 0 0
chr7:142566179|142566474 hsa-miR-7847-3p 1 1 0
chr7:142566179|142566474 hsa-miR-3928-3p 1 1 0
chr7:142566179|142566474 hsa-miR-6772-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6827-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6760-5p 1 0 0
chr7:142566179|142566474 hsa-miR-1226-5p 1 0 0
chr7:142566179|142566474 hsa-miR-1229-5p 1 0 0
chr7:142566179|142566474 hsa-miR-296-3p 1 0 0
chr7:142566179|142566474 hsa-miR-6834-5p 1 1 0
chr7:142566179|142566474 hsa-miR-149-3p 1 0 0
chr7:142566179|142566474 hsa-miR-6824-5p 1 0 0
chr7:142566179|142566474 hsa-miR-3162-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6742-3p 0 1 0
chr7:142566179|142566474 hsa-miR-6769a-3p 0 1 0
chr7:142566179|142566474 hsa-miR-6887-3p 0 1 0
chr7:142566179|142566474 hsa-miR-6792-5p 1 0 0
chr7:142566179|142566474 hsa-miR-4749-3p 0 1 0
chr7:142566179|142566474 hsa-miR-371b-3p 0 1 0
chr7:142566179|142566474 hsa-miR-4714-5p 0 1 0
chr7:142566179|142566474 hsa-miR-1233-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6769b-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6778-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6754-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6769a-5p 1 0 0
chr7:142566179|142566474 hsa-miR-11181-3p 1 0 0
chr7:142566179|142566474 hsa-miR-1249-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6763-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6875-5p 1 0 0
chr7:142566179|142566474 hsa-miR-7111-5p 1 0 0
chr7:142566179|142566474 hsa-miR-3620-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6780b-5p 1 0 0
chr7:142566179|142566474 hsa-miR-328-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6777-5p 1 1 0
chr7:142566179|142566474 hsa-miR-6795-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6887-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6889-5p 0 1 0
chr7:142566179|142566474 hsa-miR-4436b-3p 1 0 0
chr7:142566179|142566474 hsa-miR-4723-5p 1 1 0
chr7:142566179|142566474 hsa-miR-6831-5p 1 0 0
chr7:142566179|142566474 hsa-miR-4758-5p 1 0 0
chr7:142566179|142566474 hsa-miR-3940-5p 1 1 0
chr7:142566179|142566474 hsa-miR-6736-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6762-5p 1 0 0
chr7:142566179|142566474 hsa-miR-6859-5p 0 1 0
chr7:142566179|142566474 hsa-miR-6817-5p 0 1 0
chr7:142566179|142566474 hsa-miR-549a-3p 1 1 0
chr7:142566179|142566474 hsa-miR-301a-5p 0 1 0
chr7:142566179|142566474 hsa-miR-627-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:142566179|142566474
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MNGRVGRGTKKSPWELIRFIFCSCHRLLLGSSTSNLGLPHSSHQPRVYSQYRSQSDPLG
Nucleotide Sequence ATGAATGGCAGAGTTGGGAGGGGCACTAAAAAATCCCCGTGGGAACTCATTCGATTTATCTTCTGTAGTTGTCATAGACTCCTCTTAGGTTCCTCTACTTCTAATCTTGGCCTCCCTCATTCTAGCCACCAACCCAGGGTCTACTCTCAATACAGAAGTCAGAGTGATCCTTTAGGTTAG
CircID chr7:142566179|142566474
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MAELGGALKNPRGNSFDLSSVVVIDSS
Nucleotide Sequence ATGGCAGAGTTGGGAGGGGCACTAAAAAATCCCCGTGGGAACTCATTCGATTTATCTTCTGTAGTTGTCATAGACTCCTCTTAG
CircID chr7:142566179|142566474
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MTSVLRVDPGLVARMREAKIRSRGT
Nucleotide Sequence CTGACTTCTGTATTGAGAGTAGACCCTGGGTTGGTGGCTAGAATGAGGGAGGCCAAGATTAGAAGTAGAGGAACCTAA
CircID chr7:142566179|142566474
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MTTTEDKSNEFPRGFFSAPPNSAIHRNLRGVGFNR
Nucleotide Sequence ATGACAACTACAGAAGATAAATCGAATGAGTTCCCACGGGGATTTTTTAGTGCCCCTCCCAACTCTGCCATTCATAGGAACCTACGGGGAGTTGGCTTTAATCGG
CircID chr7:142566179|142566474
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MSSHGDFLVPLPTLPFIGTYGELALIG
Nucleotide Sequence ATGAGTTCCCACGGGGATTTTTTAGTGCCCCTCCCAACTCTGCCATTCATAGGAACCTACGGGGAGTTGGCTTTAATCGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab