CircRNA Information

General Information
circRNA Basic Information
CircID chr7:143383029|143383322
Strand +
CircType exon
Host Gene ENSG00000159840.14;
Algorism CIRI2;
Sequence CTGGTTTTGGTTCTGAGCCGGTGGGGGCACGGGGTGCTGCTTCTCCTGCACTCGGGGCTTCTCCCTCTGCTGGGCATAGGTGAAGCTGGGAGGTTGAGGGGAGCCTGTGCCAGCAGAAAGAGCTTCGGGGTGCCCCAATTTTTGATTTGGTTGTGACCCAGATCCACCTGGGGCTCCAGGACTGAACTTGGAAGCCACAGGAGTAAACTTAGGAGTCACTGGAGAAAACTTAGGGGCTGGAGCCGGAGATGAGGCTGGGGGCCCTCGGGGCTGGGTGTTAGCCAAAGACACAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:143383029|143383322 hsa-miR-15a-5p 0 0 1
chr7:143383029|143383322 hsa-miR-15a-3p 0 0 1
chr7:143383029|143383322 hsa-miR-15b-5p 0 0 1
chr7:143383029|143383322 hsa-miR-15b-3p 0 0 1
chr7:143383029|143383322 hsa-miR-195-5p 0 0 1
chr7:143383029|143383322 hsa-miR-195-3p 0 0 1
chr7:143383029|143383322 hsa-miR-424-5p 0 0 1
chr7:143383029|143383322 hsa-miR-424-3p 0 0 1
chr7:143383029|143383322 hsa-miR-412-5p 0 0 1
chr7:143383029|143383322 hsa-miR-412-3p 0 0 1
chr7:143383029|143383322 hsa-miR-484 0 0 1
chr7:143383029|143383322 hsa-miR-511-5p 0 0 1
chr7:143383029|143383322 hsa-miR-511-3p 0 0 1
chr7:143383029|143383322 hsa-miR-497-5p 0 0 1
chr7:143383029|143383322 hsa-miR-497-3p 0 0 1
chr7:143383029|143383322 hsa-miR-766-5p 0 0 1
chr7:143383029|143383322 hsa-miR-766-3p 0 0 1
chr7:143383029|143383322 hsa-miR-922 0 0 1
chr7:143383029|143383322 hsa-miR-1286 0 0 1
chr7:143383029|143383322 hsa-miR-1825 0 0 1
chr7:143383029|143383322 hsa-miR-1225-3p 1 0 1
chr7:143383029|143383322 hsa-miR-296-5p 1 0 1
chr7:143383029|143383322 hsa-miR-486-3p 0 0 1
chr7:143383029|143383322 hsa-miR-199a-5p 0 0 1
chr7:143383029|143383322 hsa-miR-361-3p 0 0 1
chr7:143383029|143383322 hsa-miR-199b-5p 0 0 1
chr7:143383029|143383322 hsa-miR-455-3p 0 0 1
chr7:143383029|143383322 hsa-miR-515-5p 0 0 1
chr7:143383029|143383322 hsa-miR-1280 0 0 1
chr7:143383029|143383322 hsa-miR-16 0 0 1
chr7:143383029|143383322 hsa-miR-9 0 0 1
chr7:143383029|143383322 hsa-miR-544 0 0 1
chr7:143383029|143383322 hsa-miR-24 0 0 1
chr7:143383029|143383322 hsa-miR-760 1 0 0
chr7:143383029|143383322 hsa-miR-3943 1 0 0
chr7:143383029|143383322 hsa-miR-3972 1 0 0
chr7:143383029|143383322 hsa-miR-4682 1 0 0
chr7:143383029|143383322 hsa-miR-6070 1 0 0
chr7:143383029|143383322 hsa-miR-22-5p 1 0 0
chr7:143383029|143383322 hsa-miR-512-5p 1 0 0
chr7:143383029|143383322 hsa-miR-6861-5p 1 0 0
chr7:143383029|143383322 hsa-miR-6849-3p 1 0 0
chr7:143383029|143383322 hsa-miR-6845-3p 1 0 0
chr7:143383029|143383322 hsa-miR-4697-3p 1 0 0
chr7:143383029|143383322 hsa-miR-7113-3p 1 0 0
chr7:143383029|143383322 hsa-miR-7111-3p 1 0 0
chr7:143383029|143383322 hsa-miR-4707-5p 1 0 0
chr7:143383029|143383322 hsa-miR-345-5p 1 0 0
chr7:143383029|143383322 hsa-miR-7106-3p 1 0 0
chr7:143383029|143383322 hsa-miR-6871-3p 1 0 0
chr7:143383029|143383322 hsa-miR-3940-3p 1 0 0
chr7:143383029|143383322 hsa-miR-1296-5p 1 0 0
chr7:143383029|143383322 hsa-miR-6826-3p 1 0 0
chr7:143383029|143383322 hsa-miR-1292-3p 1 0 0
chr7:143383029|143383322 hsa-miR-1249-3p 1 0 0
chr7:143383029|143383322 hsa-miR-4685-3p 1 0 0
chr7:143383029|143383322 hsa-miR-1909-3p 1 0 0
chr7:143383029|143383322 hsa-miR-10396a-3p 1 0 0
chr7:143383029|143383322 hsa-miR-10396b-3p 1 0 0
chr7:143383029|143383322 hsa-miR-10398-5p 1 0 0
chr7:143383029|143383322 hsa-miR-6801-3p 1 0 0
chr7:143383029|143383322 hsa-miR-10392-3p 1 0 0
chr7:143383029|143383322 hsa-miR-3130-5p 1 0 0
chr7:143383029|143383322 hsa-miR-4723-3p 1 0 0
chr7:143383029|143383322 hsa-miR-483-3p 1 0 0
chr7:143383029|143383322 hsa-miR-6751-3p 1 0 0
chr7:143383029|143383322 hsa-miR-3150b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:143383029|143383322
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence LVLVLSRWGHGVLLLLHSGLLPLLGIGEAGRLRGACASRKSFGVPQFLIWL
Nucleotide Sequence CTGGTTTTGGTTCTGAGCCGGTGGGGGCACGGGGTGCTGCTTCTCCTGCACTCGGGGCTTCTCCCTCTGCTGGGCATAGGTGAAGCTGGGAGGTTGAGGGGAGCCTGTGCCAGCAGAAAGAGCTTCGGGGTGCCCCAATTTTTGATTTGGTTGTGA
CircID chr7:143383029|143383322
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MNLEATGVNLGVTGENLGAGAGDEAGGPRGWVLAKDT
Nucleotide Sequence CTGAACTTGGAAGCCACAGGAGTAAACTTAGGAGTCACTGGAGAAAACTTAGGGGCTGGAGCCGGAGATGAGGCTGGGGGCCCTCGGGGCTGGGTGTTAGCCAAAGACACA
CircID chr7:143383029|143383322
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MCQQKELRGAPIFDLVVTQIHLGLQD
Nucleotide Sequence CTGTGCCAGCAGAAAGAGCTTCGGGGTGCCCCAATTTTTGATTTGGTTGTGACCCAGATCCACCTGGGGCTCCAGGACTGA
CircID chr7:143383029|143383322
ORF Type ORF4
Protein Length 95
Nucleotide Length 285
Protein Sequence MANTQPRGPPASSPAPAPKFSPVTPKFTPVASKFSPGAPGGSGSQPNQKLGHPEALSAGTGSPQPPSFTYAQQREKPRVQEKQHPVPPPAQNQNQ
Nucleotide Sequence TTGGCTAACACCCAGCCCCGAGGGCCCCCAGCCTCATCTCCGGCTCCAGCCCCTAAGTTTTCTCCAGTGACTCCTAAGTTTACTCCTGTGGCTTCCAAGTTCAGTCCTGGAGCCCCAGGTGGATCTGGGTCACAACCAAATCAAAAATTGGGGCACCCCGAAGCTCTTTCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCACCTATGCCCAGCAGAGGGAGAAGCCCCGAGTGCAGGAGAAGCAGCACCCCGTGCCCCCACCGGCTCAGAACCAAAACCAG
CircID chr7:143383029|143383322
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence LCLWLTPSPEGPQPHLRLQPLSFLQ
Nucleotide Sequence CTGTGTCTTTGGCTAACACCCAGCCCCGAGGGCCCCCAGCCTCATCTCCGGCTCCAGCCCCTAAGTTTTCTCCAGTGA
CircID chr7:143383029|143383322
ORF Type ORF6
Protein Length 66
Nucleotide Length 198
Protein Sequence MWLPSSVLEPQVDLGHNQIKNWGTPKLFLLAQAPLNLPASPMPSRGRSPECRRSSTPCPHRLRTKT
Nucleotide Sequence CTGTGGCTTCCAAGTTCAGTCCTGGAGCCCCAGGTGGATCTGGGTCACAACCAAATCAAAAATTGGGGCACCCCGAAGCTCTTTCTGCTGGCACAGGCTCCCCTCAACCTCCCAGCTTCACCTATGCCCAGCAGAGGGAGAAGCCCCGAGTGCAGGAGAAGCAGCACCCCGTGCCCCCACCGGCTCAGAACCAAAACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab