CircRNA Information

General Information
circRNA Basic Information
CircID chr7:1470895|1471191
Strand -
CircType exon
Host Gene ENSG00000164880.14;
Algorism CIRI2;
Sequence CACCTCAAAGTCCTGGCTGCCCAGGCAGTACATGAACGTGGGCAGGAAAGCGGCTGCAATGCTGAAAGACCCACACACTTCAGTGGGAACCTCCACCCTGTGCCCACGCCAGACCCCCACCCGACAGGGCGAGCTGAGCCGCCTGGAAGCCTGGTCTGGCCACCAGGCGGGTCAAGCGGTGACCTGGGTTAGCAGGGCCCAGCGGTGGCGGCGGGACAGAGGCCGGCGGTGGCCTCACCTGGGGCTGTTCTGCATGGAGCGCAGGGCCAGGCTGAAGGCGAGGTTGCGGCAACACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:1470895|1471191 hsa-miR-328-5p 0 0 1
chr7:1470895|1471191 hsa-miR-328-3p 0 0 1
chr7:1470895|1471191 hsa-miR-573 0 1 1
chr7:1470895|1471191 hsa-miR-595 0 0 1
chr7:1470895|1471191 hsa-miR-612 0 1 1
chr7:1470895|1471191 hsa-miR-661 0 0 1
chr7:1470895|1471191 hsa-miR-662 0 0 1
chr7:1470895|1471191 hsa-miR-1301-5p 0 0 1
chr7:1470895|1471191 hsa-miR-1301-3p 0 0 1
chr7:1470895|1471191 hsa-miR-298 0 0 1
chr7:1470895|1471191 hsa-miR-1206 0 1 1
chr7:1470895|1471191 hsa-miR-1291 0 1 1
chr7:1470895|1471191 hsa-miR-1304-5p 0 0 1
chr7:1470895|1471191 hsa-miR-1304-3p 0 0 1
chr7:1470895|1471191 hsa-miR-1249-5p 0 0 1
chr7:1470895|1471191 hsa-miR-1249-3p 0 0 1
chr7:1470895|1471191 hsa-miR-125a-3p 0 1 1
chr7:1470895|1471191 hsa-miR-296-5p 0 0 1
chr7:1470895|1471191 hsa-miR-193a-5p 0 0 1
chr7:1470895|1471191 hsa-miR-146b-3p 0 0 1
chr7:1470895|1471191 hsa-miR-339-5p 0 0 1
chr7:1470895|1471191 hsa-miR-188-3p 0 0 1
chr7:1470895|1471191 hsa-miR-1260 0 0 1
chr7:1470895|1471191 hsa-miR-220c 0 0 1
chr7:1470895|1471191 hsa-miR-644 0 0 1
chr7:1470895|1471191 hsa-miR-1285 0 0 1
chr7:1470895|1471191 hsa-miR-1254 0 0 1
chr7:1470895|1471191 hsa-miR-24 0 0 1
chr7:1470895|1471191 hsa-miR-147 0 0 1
chr7:1470895|1471191 hsa-miR-1181 1 0 0
chr7:1470895|1471191 hsa-miR-1231 0 1 0
chr7:1470895|1471191 hsa-miR-1268a 1 0 0
chr7:1470895|1471191 hsa-miR-1913 1 0 0
chr7:1470895|1471191 hsa-miR-718 1 0 0
chr7:1470895|1471191 hsa-miR-3147 1 0 0
chr7:1470895|1471191 hsa-miR-4316 0 1 0
chr7:1470895|1471191 hsa-miR-3937 0 1 0
chr7:1470895|1471191 hsa-miR-1268b 1 0 0
chr7:1470895|1471191 hsa-miR-4447 0 1 0
chr7:1470895|1471191 hsa-miR-6860 1 1 0
chr7:1470895|1471191 hsa-miR-12129 0 1 0
chr7:1470895|1471191 hsa-miR-92a-2-5p 0 1 0
chr7:1470895|1471191 hsa-miR-4665-3p 1 0 0
chr7:1470895|1471191 hsa-miR-4726-3p 1 1 0
chr7:1470895|1471191 hsa-miR-6861-5p 1 0 0
chr7:1470895|1471191 hsa-miR-1972 0 1 0
chr7:1470895|1471191 hsa-miR-24-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6726-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6787-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6782-5p 1 0 0
chr7:1470895|1471191 hsa-miR-5006-5p 1 0 0
chr7:1470895|1471191 hsa-miR-939-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6763-3p 1 0 0
chr7:1470895|1471191 hsa-miR-1908-3p 1 0 0
chr7:1470895|1471191 hsa-miR-1228-5p 1 0 0
chr7:1470895|1471191 hsa-miR-7156-3p 0 1 0
chr7:1470895|1471191 hsa-miR-4772-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6856-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6738-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6501-3p 0 1 0
chr7:1470895|1471191 hsa-miR-3124-3p 0 1 0
chr7:1470895|1471191 hsa-miR-4717-5p 0 1 0
chr7:1470895|1471191 hsa-miR-33a-5p 0 1 0
chr7:1470895|1471191 hsa-miR-744-3p 0 1 0
chr7:1470895|1471191 hsa-miR-10400-5p 1 0 0
chr7:1470895|1471191 hsa-miR-6752-5p 1 0 0
chr7:1470895|1471191 hsa-miR-6756-5p 1 1 0
chr7:1470895|1471191 hsa-miR-6803-5p 0 1 0
chr7:1470895|1471191 hsa-miR-6751-5p 0 1 0
chr7:1470895|1471191 hsa-miR-6774-5p 1 1 0
chr7:1470895|1471191 hsa-miR-5189-5p 0 1 0
chr7:1470895|1471191 hsa-miR-3187-5p 1 1 0
chr7:1470895|1471191 hsa-miR-365b-5p 1 0 0
chr7:1470895|1471191 hsa-miR-6799-3p 0 1 0
chr7:1470895|1471191 hsa-miR-324-3p 1 0 0
chr7:1470895|1471191 hsa-miR-4757-5p 1 1 0
chr7:1470895|1471191 hsa-miR-10401-3p 1 1 0
chr7:1470895|1471191 hsa-miR-6775-3p 1 1 0
chr7:1470895|1471191 hsa-miR-6819-3p 0 1 0
chr7:1470895|1471191 hsa-miR-6744-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:1470895|1471191
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MAAQAVHERGQESGCNAERPTHFSGNLHPVPTPDPHPTGRAEPPGSLVWPPGGSSGDLG
Nucleotide Sequence CTGGCTGCCCAGGCAGTACATGAACGTGGGCAGGAAAGCGGCTGCAATGCTGAAAGACCCACACACTTCAGTGGGAACCTCCACCCTGTGCCCACGCCAGACCCCCACCCGACAGGGCGAGCTGAGCCGCCTGGAAGCCTGGTCTGGCCACCAGGCGGGTCAAGCGGTGACCTGGGTTAG
CircID chr7:1470895|1471191
ORF Type ORF2
Protein Length 93
Nucleotide Length 279
Protein Sequence MPRQYMNVGRKAAAMLKDPHTSVGTSTLCPRQTPTRQGELSRLEAWSGHQAGQAVTWVSRAQRWRRDRGRRWPHLGLFCMERRARLKARLRQH
Nucleotide Sequence CTGCCCAGGCAGTACATGAACGTGGGCAGGAAAGCGGCTGCAATGCTGAAAGACCCACACACTTCAGTGGGAACCTCCACCCTGTGCCCACGCCAGACCCCCACCCGACAGGGCGAGCTGAGCCGCCTGGAAGCCTGGTCTGGCCACCAGGCGGGTCAAGCGGTGACCTGGGTTAGCAGGGCCCAGCGGTGGCGGCGGGACAGAGGCCGGCGGTGGCCTCACCTGGGGCTGTTCTGCATGGAGCGCAGGGCCAGGCTGAAGGCGAGGTTGCGGCAACAC
CircID chr7:1470895|1471191
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MKCVGLSALQPLSCPRSCTAWAARTLR
Nucleotide Sequence CTGAAGTGTGTGGGTCTTTCAGCATTGCAGCCGCTTTCCTGCCCACGTTCATGTACTGCCTGGGCAGCCAGGACTTTGAGG
CircID chr7:1470895|1471191
ORF Type ORF4
Protein Length 70
Nucleotide Length 213
Protein Sequence MPQPRLQPGPALHAEQPQVRPPPASVPPPPLGPANPGHRLTRLVARPGFQAAQLALSGGGLAWAQGGGSH
Nucleotide Sequence TTGCCGCAACCTCGCCTTCAGCCTGGCCCTGCGCTCCATGCAGAACAGCCCCAGGTGAGGCCACCGCCGGCCTCTGTCCCGCCGCCACCGCTGGGCCCTGCTAACCCAGGTCACCGCTTGACCCGCCTGGTGGCCAGACCAGGCTTCCAGGCGGCTCAGCTCGCCCTGTCGGGTGGGGGTCTGGCGTGGGCACAGGGTGGAGGTTCCCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab