CircRNA Information

General Information
circRNA Basic Information
CircID chr7:151377509|151377622
Strand -
CircType exon
Host Gene ENSG00000013374.14;
Algorism CIRI2;
Sequence AGGGGTCCTGTAGAACAGGGGTCCTGGGGAAGGTGTCCAGGGCAGGGTCCTGGGAAGGGTGTCCCGACCGCTTCCTCTCCAGCTGTGGCTCCATCTGCCCAGCTTGCCTGCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:151377509|151377622 hsa-miR-185-5p 0 0 1
chr7:151377509|151377622 hsa-miR-185-3p 0 0 1
chr7:151377509|151377622 hsa-miR-504-5p 0 0 1
chr7:151377509|151377622 hsa-miR-504-3p 0 0 1
chr7:151377509|151377622 hsa-miR-612 0 1 1
chr7:151377509|151377622 hsa-miR-874-5p 0 0 1
chr7:151377509|151377622 hsa-miR-874-3p 0 0 1
chr7:151377509|151377622 hsa-miR-940 0 0 1
chr7:151377509|151377622 hsa-miR-1827 0 0 1
chr7:151377509|151377622 hsa-miR-139-5p 0 0 1
chr7:151377509|151377622 hsa-miR-146b-3p 0 0 1
chr7:151377509|151377622 hsa-miR-1207-3p 0 0 1
chr7:151377509|151377622 hsa-miR-1274b 0 0 1
chr7:151377509|151377622 hsa-miR-1285 0 0 1
chr7:151377509|151377622 hsa-miR-650 1 0 0
chr7:151377509|151377622 hsa-miR-3125 0 1 0
chr7:151377509|151377622 hsa-miR-3132 1 0 0
chr7:151377509|151377622 hsa-miR-3153 1 0 0
chr7:151377509|151377622 hsa-miR-320e 0 1 0
chr7:151377509|151377622 hsa-miR-4308 0 1 0
chr7:151377509|151377622 hsa-miR-3916 1 0 0
chr7:151377509|151377622 hsa-miR-3135b 0 1 0
chr7:151377509|151377622 hsa-miR-4736 0 1 0
chr7:151377509|151377622 hsa-miR-4739 1 0 0
chr7:151377509|151377622 hsa-miR-6088 1 0 0
chr7:151377509|151377622 hsa-miR-6127 1 1 0
chr7:151377509|151377622 hsa-miR-6133 1 0 0
chr7:151377509|151377622 hsa-miR-26b-3p 0 1 0
chr7:151377509|151377622 hsa-miR-18a-3p 0 1 0
chr7:151377509|151377622 hsa-miR-6840-3p 0 1 0
chr7:151377509|151377622 hsa-miR-6861-5p 1 1 0
chr7:151377509|151377622 hsa-miR-7106-5p 1 0 0
chr7:151377509|151377622 hsa-miR-197-5p 1 0 0
chr7:151377509|151377622 hsa-miR-3180-3p 1 0 0
chr7:151377509|151377622 hsa-miR-4725-5p 0 1 0
chr7:151377509|151377622 hsa-miR-4690-5p 0 1 0
chr7:151377509|151377622 hsa-miR-4638-3p 0 1 0
chr7:151377509|151377622 hsa-miR-1266-3p 0 1 0
chr7:151377509|151377622 hsa-miR-6786-3p 0 1 0
chr7:151377509|151377622 hsa-miR-7160-3p 0 1 0
chr7:151377509|151377622 hsa-miR-6752-3p 0 1 0
chr7:151377509|151377622 hsa-miR-6734-3p 0 1 0
chr7:151377509|151377622 hsa-miR-1207-5p 1 0 0
chr7:151377509|151377622 hsa-miR-4763-3p 1 0 0
chr7:151377509|151377622 hsa-miR-6893-5p 1 1 0
chr7:151377509|151377622 hsa-miR-6743-5p 1 0 0
chr7:151377509|151377622 hsa-miR-6797-5p 1 0 0
chr7:151377509|151377622 hsa-miR-6808-5p 0 1 0
chr7:151377509|151377622 hsa-miR-5189-5p 0 1 0
chr7:151377509|151377622 hsa-miR-6858-5p 1 0 0
chr7:151377509|151377622 hsa-miR-3187-5p 0 1 0
chr7:151377509|151377622 hsa-miR-6856-5p 1 0 0
chr7:151377509|151377622 hsa-miR-4747-5p 1 0 0
chr7:151377509|151377622 hsa-miR-6859-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:151377509|151377622
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MGKVSRAGSWEGCPDRFLSSCGSICPACLP
Nucleotide Sequence CTGGGGAAGGTGTCCAGGGCAGGGTCCTGGGAAGGGTGTCCCGACCGCTTCCTCTCCAGCTGTGGCTCCATCTGCCCAGCTTGCCTGCCT
CircID chr7:151377509|151377622
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MGRWSHSWRGSGRDTLPRTLPWTPSPGPLFYRTP
Nucleotide Sequence CTGGGCAGATGGAGCCACAGCTGGAGAGGAAGCGGTCGGGACACCCTTCCCAGGACCCTGCCCTGGACACCTTCCCCAGGACCCCTGTTCTACAGGACCCCT
CircID chr7:151377509|151377622
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MEPQLERKRSGHPSQDPALDTFPRTPVLQDP
Nucleotide Sequence ATGGAGCCACAGCTGGAGAGGAAGCGGTCGGGACACCCTTCCCAGGACCCTGCCCTGGACACCTTCCCCAGGACCCCTGTTCTACAGGACCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab