CircRNA Information

General Information
circRNA Basic Information
CircID chr7:155462480|155462710
Strand -
CircType exon
Host Gene ENSG00000164778.4;
Algorism CIRI2;
Sequence CAACAGGTACCTGACGGAGCAGCGGCGCCAGAGCCTGGCGCAGGAGCTGAGCCTCAACGAGTCACAGATCAAGATTTGGTTCCAGAACAAGCGCGCCAAGATCAAGAAGGCCACGGGCAACAAGAACACGCTGGCCGTGCACCTCATGGCACAGGGCTTGTACAACCACTCCACCACAGCCAAGGAGGGCAAGTCGGACAGCGAGTAGGGCGGGGGGCATGGAGGCCAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:155462480|155462710 hsa-miR-122-5p 0 0 1
chr7:155462480|155462710 hsa-miR-122-3p 0 0 1
chr7:155462480|155462710 hsa-miR-134-5p 0 0 1
chr7:155462480|155462710 hsa-miR-134-3p 0 0 1
chr7:155462480|155462710 hsa-miR-484 0 1 1
chr7:155462480|155462710 hsa-miR-526b-5p 0 0 1
chr7:155462480|155462710 hsa-miR-526b-3p 0 0 1
chr7:155462480|155462710 hsa-miR-578 0 0 1
chr7:155462480|155462710 hsa-miR-647 0 0 1
chr7:155462480|155462710 hsa-miR-874-5p 0 0 1
chr7:155462480|155462710 hsa-miR-874-3p 0 0 1
chr7:155462480|155462710 hsa-miR-760 0 1 1
chr7:155462480|155462710 hsa-miR-1227-5p 0 0 1
chr7:155462480|155462710 hsa-miR-1227-3p 0 0 1
chr7:155462480|155462710 hsa-miR-1204 0 1 1
chr7:155462480|155462710 hsa-miR-1299 1 0 1
chr7:155462480|155462710 hsa-miR-1304-5p 0 0 1
chr7:155462480|155462710 hsa-miR-1304-3p 0 0 1
chr7:155462480|155462710 hsa-miR-1248 1 1 1
chr7:155462480|155462710 hsa-miR-140-5p 0 1 1
chr7:155462480|155462710 hsa-miR-485-5p 0 0 1
chr7:155462480|155462710 hsa-miR-146b-3p 0 0 1
chr7:155462480|155462710 hsa-miR-566 0 0 1
chr7:155462480|155462710 hsa-miR-875-3p 0 0 1
chr7:155462480|155462710 hsa-miR-516b 0 0 1
chr7:155462480|155462710 hsa-miR-453 0 0 1
chr7:155462480|155462710 hsa-miR-720 0 0 1
chr7:155462480|155462710 hsa-miR-24 0 0 1
chr7:155462480|155462710 hsa-miR-1470 1 0 0
chr7:155462480|155462710 hsa-miR-1913 1 0 0
chr7:155462480|155462710 hsa-miR-1976 0 1 0
chr7:155462480|155462710 hsa-miR-3155a 0 1 0
chr7:155462480|155462710 hsa-miR-4290 0 1 0
chr7:155462480|155462710 hsa-miR-4479 1 0 0
chr7:155462480|155462710 hsa-miR-3155b 0 1 0
chr7:155462480|155462710 hsa-miR-7974 1 0 0
chr7:155462480|155462710 hsa-miR-9899 1 0 0
chr7:155462480|155462710 hsa-miR-6749-3p 1 0 0
chr7:155462480|155462710 hsa-miR-132-5p 0 1 0
chr7:155462480|155462710 hsa-miR-18a-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6879-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6765-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6836-3p 1 0 0
chr7:155462480|155462710 hsa-miR-210-5p 1 0 0
chr7:155462480|155462710 hsa-miR-8071 1 0 0
chr7:155462480|155462710 hsa-miR-6880-5p 1 0 0
chr7:155462480|155462710 hsa-miR-3064-5p 0 1 0
chr7:155462480|155462710 hsa-miR-4755-3p 0 1 0
chr7:155462480|155462710 hsa-miR-24-3p 0 1 0
chr7:155462480|155462710 hsa-miR-296-5p 1 0 0
chr7:155462480|155462710 hsa-miR-4474-3p 1 1 0
chr7:155462480|155462710 hsa-miR-6787-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6742-5p 1 0 0
chr7:155462480|155462710 hsa-miR-2467-5p 0 1 0
chr7:155462480|155462710 hsa-miR-6827-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6782-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6786-5p 1 0 0
chr7:155462480|155462710 hsa-miR-4763-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6763-3p 1 0 0
chr7:155462480|155462710 hsa-miR-7108-3p 0 1 0
chr7:155462480|155462710 hsa-miR-1247-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6894-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6803-3p 1 0 0
chr7:155462480|155462710 hsa-miR-7161-3p 1 0 0
chr7:155462480|155462710 hsa-miR-7113-3p 1 0 0
chr7:155462480|155462710 hsa-miR-4783-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6878-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6501-5p 1 0 0
chr7:155462480|155462710 hsa-miR-4667-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6736-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6769a-3p 1 0 0
chr7:155462480|155462710 hsa-miR-2115-5p 0 1 0
chr7:155462480|155462710 hsa-miR-4638-5p 1 0 0
chr7:155462480|155462710 hsa-miR-4687-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6752-3p 1 0 0
chr7:155462480|155462710 hsa-miR-3614-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6872-3p 1 1 0
chr7:155462480|155462710 hsa-miR-3605-3p 1 1 0
chr7:155462480|155462710 hsa-miR-4632-3p 1 1 0
chr7:155462480|155462710 hsa-miR-1914-5p 0 1 0
chr7:155462480|155462710 hsa-miR-328-3p 1 0 0
chr7:155462480|155462710 hsa-miR-1306-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6779-3p 0 1 0
chr7:155462480|155462710 hsa-miR-4433b-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6729-3p 1 1 0
chr7:155462480|155462710 hsa-miR-18b-3p 1 0 0
chr7:155462480|155462710 hsa-miR-5581-3p 0 1 0
chr7:155462480|155462710 hsa-miR-4762-5p 0 1 0
chr7:155462480|155462710 hsa-miR-6737-5p 1 1 0
chr7:155462480|155462710 hsa-miR-6756-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6819-5p 0 1 0
chr7:155462480|155462710 hsa-miR-10394-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6791-3p 1 0 0
chr7:155462480|155462710 hsa-miR-342-5p 1 0 0
chr7:155462480|155462710 hsa-miR-10401-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6801-3p 1 0 0
chr7:155462480|155462710 hsa-miR-3085-3p 1 0 0
chr7:155462480|155462710 hsa-miR-6848-3p 1 0 0
chr7:155462480|155462710 hsa-miR-323b-5p 1 0 0
chr7:155462480|155462710 hsa-miR-6876-3p 0 1 0
chr7:155462480|155462710 hsa-miR-6843-3p 1 1 0
chr7:155462480|155462710 hsa-miR-494-5p 1 1 0
chr7:155462480|155462710 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:155462480|155462710
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MVPEQARQDQEGHGQQEHAGRAPHGTGLVQPLHHSQGGQVGQRVGRGAWRPG
Nucleotide Sequence TTGGTTCCAGAACAAGCGCGCCAAGATCAAGAAGGCCACGGGCAACAAGAACACGCTGGCCGTGCACCTCATGGCACAGGGCTTGTACAACCACTCCACCACAGCCAAGGAGGGCAAGTCGGACAGCGAGTAGGGCGGGGGGCATGGAGGCCAGGT
CircID chr7:155462480|155462710
ORF Type ORF2
Protein Length 65
Nucleotide Length 198
Protein Sequence MTEQRRQSLAQELSLNESQIKIWFQNKRAKIKKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE
Nucleotide Sequence CTGACGGAGCAGCGGCGCCAGAGCCTGGCGCAGGAGCTGAGCCTCAACGAGTCACAGATCAAGATTTGGTTCCAGAACAAGCGCGCCAAGATCAAGAAGGCCACGGGCAACAAGAACACGCTGGCCGTGCACCTCATGGCACAGGGCTTGTACAACCACTCCACCACAGCCAAGGAGGGCAAGTCGGACAGCGAGTAG
CircID chr7:155462480|155462710
ORF Type ORF3
Protein Length 67
Nucleotide Length 201
Protein Sequence MSDLPSLAVVEWLYKPCAMRCTASVFLLPVAFLILARLFWNQILICDSLRLSSCARLWRRCSVRYLL
Nucleotide Sequence CTGTCCGACTTGCCCTCCTTGGCTGTGGTGGAGTGGTTGTACAAGCCCTGTGCCATGAGGTGCACGGCCAGCGTGTTCTTGTTGCCCGTGGCCTTCTTGATCTTGGCGCGCTTGTTCTGGAACCAAATCTTGATCTGTGACTCGTTGAGGCTCAGCTCCTGCGCCAGGCTCTGGCGCCGCTGCTCCGTCAGGTACCTGTTG
CircID chr7:155462480|155462710
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence LASMPPALLAVRLALLGCGGVVVQALCHEVHGQRVLVARGLLDLGALVLEPNLDL
Nucleotide Sequence CTGGCCTCCATGCCCCCCGCCCTACTCGCTGTCCGACTTGCCCTCCTTGGCTGTGGTGGAGTGGTTGTACAAGCCCTGTGCCATGAGGTGCACGGCCAGCGTGTTCTTGTTGCCCGTGGCCTTCTTGATCTTGGCGCGCTTGTTCTGGAACCAAATCTTGATCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab