CircRNA Information

General Information
circRNA Basic Information
CircID chr7:17845595|17850964
Strand -
CircType exon
Host Gene ENSG00000071189.21;
Algorism find_circ;CIRI2;DCC;
Sequence ATCCGTGATTCTAACTGCAACTATGAGGCCTTTATGAACATTATTAAATTGAGTGACAATATTGGAGAGCTAGAAGCAGTCAGAGATAAGGCAGCAGAAGAATTACAGTATCTTAGATCTCTAGATACAGCTGGTGATGATATCAACACTATCAAAAATCAAATAAATAGCTTACTATTCGTAAAGAAGGTATGTGACTCAAGAATACAGCGATTGCAGTCAGGCAAAGAAATAAATACTGTGAAACTTGCAGCAAACTTTGGGAAACTTTGCACAGTCCCCCTGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:17845595|17850964 hsa-miR-21-5p 0 0 1
chr7:17845595|17850964 hsa-miR-21-3p 0 0 1
chr7:17845595|17850964 hsa-miR-107 0 0 1
chr7:17845595|17850964 hsa-miR-200b-5p 0 0 1
chr7:17845595|17850964 hsa-miR-200b-3p 0 0 1
chr7:17845595|17850964 hsa-miR-144-5p 0 0 1
chr7:17845595|17850964 hsa-miR-144-3p 0 0 1
chr7:17845595|17850964 hsa-miR-134-5p 0 0 1
chr7:17845595|17850964 hsa-miR-134-3p 0 0 1
chr7:17845595|17850964 hsa-miR-185-5p 0 0 1
chr7:17845595|17850964 hsa-miR-185-3p 0 0 1
chr7:17845595|17850964 hsa-miR-186-5p 0 0 1
chr7:17845595|17850964 hsa-miR-186-3p 0 0 1
chr7:17845595|17850964 hsa-miR-200c-5p 0 0 1
chr7:17845595|17850964 hsa-miR-200c-3p 0 0 1
chr7:17845595|17850964 hsa-miR-429 0 0 1
chr7:17845595|17850964 hsa-miR-506-5p 0 0 1
chr7:17845595|17850964 hsa-miR-506-3p 0 0 1
chr7:17845595|17850964 hsa-miR-507 0 0 1
chr7:17845595|17850964 hsa-miR-545-5p 0 0 1
chr7:17845595|17850964 hsa-miR-545-3p 0 0 1
chr7:17845595|17850964 hsa-miR-557 0 1 1
chr7:17845595|17850964 hsa-miR-578 0 0 1
chr7:17845595|17850964 hsa-miR-620 0 0 1
chr7:17845595|17850964 hsa-miR-643 0 0 1
chr7:17845595|17850964 hsa-miR-1301-5p 0 0 1
chr7:17845595|17850964 hsa-miR-1301-3p 0 0 1
chr7:17845595|17850964 hsa-miR-298 0 1 1
chr7:17845595|17850964 hsa-miR-892a 0 0 1
chr7:17845595|17850964 hsa-miR-891b 0 0 1
chr7:17845595|17850964 hsa-miR-922 0 1 1
chr7:17845595|17850964 hsa-miR-1179 0 0 1
chr7:17845595|17850964 hsa-miR-1251-5p 0 0 1
chr7:17845595|17850964 hsa-miR-1251-3p 0 0 1
chr7:17845595|17850964 hsa-miR-1270 0 0 1
chr7:17845595|17850964 hsa-miR-138-5p 0 1 1
chr7:17845595|17850964 hsa-miR-1207-3p 0 0 1
chr7:17845595|17850964 hsa-miR-331-3p 0 1 1
chr7:17845595|17850964 hsa-miR-338-5p 0 0 1
chr7:17845595|17850964 hsa-miR-582-5p 0 0 1
chr7:17845595|17850964 hsa-miR-409-3p 0 0 1
chr7:17845595|17850964 hsa-miR-590-5p 0 0 1
chr7:17845595|17850964 hsa-miR-548c-3p 0 0 1
chr7:17845595|17850964 hsa-miR-103 0 0 1
chr7:17845595|17850964 hsa-miR-138 0 0 1
chr7:17845595|17850964 hsa-miR-124 0 0 1
chr7:17845595|17850964 hsa-miR-101 0 0 1
chr7:17845595|17850964 hsa-miR-920 1 0 0
chr7:17845595|17850964 hsa-miR-3142 0 1 0
chr7:17845595|17850964 hsa-miR-3714 0 1 0
chr7:17845595|17850964 hsa-miR-6088 1 0 0
chr7:17845595|17850964 hsa-miR-8085 1 0 0
chr7:17845595|17850964 hsa-miR-12128 1 1 0
chr7:17845595|17850964 hsa-miR-153-5p 0 1 0
chr7:17845595|17850964 hsa-miR-1236-5p 1 0 0
chr7:17845595|17850964 hsa-miR-6089 1 0 0
chr7:17845595|17850964 hsa-miR-4695-5p 1 0 0
chr7:17845595|17850964 hsa-miR-6760-5p 1 0 0
chr7:17845595|17850964 hsa-miR-885-3p 1 0 0
chr7:17845595|17850964 hsa-miR-4638-3p 0 1 0
chr7:17845595|17850964 hsa-miR-3690 0 1 0
chr7:17845595|17850964 hsa-miR-450a-2-3p 0 1 0
chr7:17845595|17850964 hsa-miR-4742-5p 1 1 0
chr7:17845595|17850964 hsa-miR-6801-5p 1 1 0
chr7:17845595|17850964 hsa-miR-3675-5p 0 1 0
chr7:17845595|17850964 hsa-miR-517-5p 1 0 0
chr7:17845595|17850964 hsa-miR-4763-3p 1 0 0
chr7:17845595|17850964 hsa-miR-6812-5p 1 0 0
chr7:17845595|17850964 hsa-miR-449c-5p 1 0 0
chr7:17845595|17850964 hsa-miR-4632-5p 1 0 0
chr7:17845595|17850964 hsa-miR-4723-5p 1 0 0
chr7:17845595|17850964 hsa-miR-939-5p 1 0 0
chr7:17845595|17850964 hsa-miR-6511a-5p 1 0 0
chr7:17845595|17850964 hsa-miR-4667-5p 1 0 0
chr7:17845595|17850964 hsa-miR-3619-5p 1 0 0
chr7:17845595|17850964 hsa-miR-10527-5p 0 1 0
chr7:17845595|17850964 hsa-miR-450a-1-3p 0 1 0
chr7:17845595|17850964 hsa-miR-7157-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:17845595|17850964
ORF Type ORF1
Protein Length 98
Nucleotide Length 294
Protein Sequence MNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFM
Nucleotide Sequence ATGAACATTATTAAATTGAGTGACAATATTGGAGAGCTAGAAGCAGTCAGAGATAAGGCAGCAGAAGAATTACAGTATCTTAGATCTCTAGATACAGCTGGTGATGATATCAACACTATCAAAAATCAAATAAATAGCTTACTATTCGTAAAGAAGGTATGTGACTCAAGAATACAGCGATTGCAGTCAGGCAAAGAAATAAATACTGTGAAACTTGCAGCAAACTTTGGGAAACTTTGCACAGTCCCCCTGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATG
CircID chr7:17845595|17850964
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MLSRGTVQSFPKFAASFTVFISLPDCNRCILESHTFFTNSKLFI*
Nucleotide Sequence ATGCTGTCCAGGGGGACTGTGCAAAGTTTCCCAAAGTTTGCTGCAAGTTTCACAGTATTTATTTCTTTGCCTGACTGCAATCGCTGTATTCTTGAGTCACATACCTTCTTTACGAATAGTAAGCTATTTATTTGA
CircID chr7:17845595|17850964
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence VQHCLQECCPGGLCKVSQSLLQVSQYLFLCLTAIAVFLSHIPSLRIVSYLFDF*
Nucleotide Sequence GTGCAACATTGTCTACAAGAATGCTGTCCAGGGGGACTGTGCAAAGTTTCCCAAAGTTTGCTGCAAGTTTCACAGTATTTATTTCTTTGCCTGACTGCAATCGCTGTATTCTTGAGTCACATACCTTCTTTACGAATAGTAAGCTATTTATTTGATTTTTGA
CircID chr7:17845595|17850964
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MCKVSQSLLQVSQYLFLCLTAIAVFLSHIPSLRIVSYLFDF
Nucleotide Sequence CTGTGCAAAGTTTCCCAAAGTTTGCTGCAAGTTTCACAGTATTTATTTCTTTGCCTGACTGCAATCGCTGTATTCTTGAGTCACATACCTTCTTTACGAATAGTAAGCTATTTATTTGATTTTTGA
CircID chr7:17845595|17850964
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MSTRMLSRGTVQSFPKFAASFTVFISLPDCNRCILESHTFFTNSKLFI
Nucleotide Sequence TTGTCTACAAGAATGCTGTCCAGGGGGACTGTGCAAAGTTTCCCAAAGTTTGCTGCAAGTTTCACAGTATTTATTTCTTTGCCTGACTGCAATCGCTGTATTCTTGAGTCACATACCTTCTTTACGAATAGTAAGCTATTTATTTGA
CircID chr7:17845595|17850964
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MIVLISSPAVSRDLRYCNSSAALSLTASSSPILSLNLIMFIKAS
Nucleotide Sequence TTGATAGTGTTGATATCATCACCAGCTGTATCTAGAGATCTAAGATACTGTAATTCTTCTGCTGCCTTATCTCTGACTGCTTCTAGCTCTCCAATATTGTCACTCAATTTAATAATGTTCATAAAGGCCTCATAG
CircID chr7:17845595|17850964
ORF Type ORF4
Protein Length 98
Nucleotide Length 294
Protein Sequence MNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFM
Nucleotide Sequence ATGAACATTATTAAATTGAGTGACAATATTGGAGAGCTAGAAGCAGTCAGAGATAAGGCAGCAGAAGAATTACAGTATCTTAGATCTCTAGATACAGCTGGTGATGATATCAACACTATCAAAAATCAAATAAATAGCTTACTATTCGTAAAGAAGGTATGTGACTCAAGAATACAGCGATTGCAGTCAGGCAAAGAAATAAATACTGTGAAACTTGCAGCAAACTTTGGGAAACTTTGCACAGTCCCCCTGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:17845595|17850964 NOP56 0 1 0
chr7:17845595|17850964 ELAVL1 12 8 0
chr7:17845595|17850964 SF3B4 1 0 0
chr7:17845595|17850964 PRPF8 0 3 2
chr7:17845595|17850964 ZNF622 0 0 1
chr7:17845595|17850964 FMR1 0 0 3
chr7:17845595|17850964 NUDT21 1 0 0
chr7:17845595|17850964 GPKOW 0 0 1
chr7:17845595|17850964 CPSF7 3 0 0
chr7:17845595|17850964 SRSF1 1 0 2
chr7:17845595|17850964 NOP58 1 1 3
chr7:17845595|17850964 CSTF2 0 3 0
chr7:17845595|17850964 U2AF2 5 4 2
chr7:17845595|17850964 HNRNPU 1 0 0
chr7:17845595|17850964 DDX54 0 0 9
chr7:17845595|17850964 IGF2BP1 0 1 1
chr7:17845595|17850964 HNRNPL 1 3 0
chr7:17845595|17850964 PCBP2 0 2 0
chr7:17845595|17850964 PTBP1 5 3 0
chr7:17845595|17850964 HNRNPC 10 8 0
chr7:17845595|17850964 HNRNPD 3 0 0
chr7:17845595|17850964 MSI2 0 0 1
chr7:17845595|17850964 MSI1 1 0 0
chr7:17845595|17850964 HNRNPA1 0 1 0
chr7:17845595|17850964 LIN28B 1 0 2
chr7:17845595|17850964 LIN28A 0 0 1
chr7:17845595|17850964 FIP1L1 0 1 0
chr7:17845595|17850964 UCHL5 0 0 1
chr7:17845595|17850964 BUD13 1 0 0
chr7:17845595|17850964 IGF2BP3 0 0 2
chr7:17845595|17850964 IGF2BP2 3 2 7
chr7:17845595|17850964 TARDBP 1 2 0
chr7:17845595|17850964 GTF2F1 1 0 0
chr7:17845595|17850964 RBM47 1 0 2
chr7:17845595|17850964 DDX24 2 0 1
chr7:17845595|17850964 CSTF2T 0 2 3
chr7:17845595|17850964 TIA1 1 0 0
chr7:17845595|17850964 WDR33 0 1 0
chr7:17845595|17850964 PPIG 0 0 1
chr7:17845595|17850964 AGO2 0 0 5
chr7:17845595|17850964 EWSR1 1 0 0
chr7:17845595|17850964 EIF4A3 4 0 6
chr7:17845595|17850964 FBL 0 1 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab