CircRNA Information

General Information
circRNA Basic Information
CircID chr7:1898200|1898390
Strand -
CircType exon
Host Gene ENSG00000002822.15;
Algorism find_circ;CIRI2;DCC;
Sequence AGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:1898200|1898390 hsa-miR-197-5p 0 0 1
chr7:1898200|1898390 hsa-miR-197-3p 0 0 1
chr7:1898200|1898390 hsa-miR-221-5p 0 0 1
chr7:1898200|1898390 hsa-miR-221-3p 0 0 1
chr7:1898200|1898390 hsa-miR-222-5p 0 0 1
chr7:1898200|1898390 hsa-miR-222-3p 0 0 1
chr7:1898200|1898390 hsa-miR-185-5p 0 0 1
chr7:1898200|1898390 hsa-miR-185-3p 0 0 1
chr7:1898200|1898390 hsa-miR-589-5p 0 0 1
chr7:1898200|1898390 hsa-miR-589-3p 0 0 1
chr7:1898200|1898390 hsa-miR-665 0 1 1
chr7:1898200|1898390 hsa-miR-770-5p 0 0 1
chr7:1898200|1898390 hsa-miR-525-5p 0 0 1
chr7:1898200|1898390 hsa-miR-520a-5p 0 0 1
chr7:1898200|1898390 hsa-miR-574-3p 0 0 1
chr7:1898200|1898390 hsa-miR-369-5p 0 0 1
chr7:1898200|1898390 hsa-miR-548b-3p 0 0 1
chr7:1898200|1898390 hsa-miR-220b 0 0 1
chr7:1898200|1898390 hsa-miR-720 0 0 1
chr7:1898200|1898390 hsa-miR-371-3p 0 0 1
chr7:1898200|1898390 hsa-miR-499-3p 0 0 1
chr7:1898200|1898390 hsa-miR-3125 1 0 0
chr7:1898200|1898390 hsa-miR-3185 0 1 0
chr7:1898200|1898390 hsa-miR-3665 0 1 0
chr7:1898200|1898390 hsa-miR-3937 1 0 0
chr7:1898200|1898390 hsa-miR-4683 1 0 0
chr7:1898200|1898390 hsa-miR-4718 0 1 0
chr7:1898200|1898390 hsa-miR-4739 1 0 0
chr7:1898200|1898390 hsa-miR-4751 0 1 0
chr7:1898200|1898390 hsa-miR-12114 0 1 0
chr7:1898200|1898390 hsa-miR-500b-3p 0 1 0
chr7:1898200|1898390 hsa-miR-6894-5p 1 0 0
chr7:1898200|1898390 hsa-miR-6799-5p 1 0 0
chr7:1898200|1898390 hsa-miR-6089 1 0 0
chr7:1898200|1898390 hsa-miR-4722-5p 1 0 0
chr7:1898200|1898390 hsa-miR-7160-5p 1 0 0
chr7:1898200|1898390 hsa-miR-2467-3p 1 0 0
chr7:1898200|1898390 hsa-miR-193b-5p 0 1 0
chr7:1898200|1898390 hsa-miR-4690-5p 1 0 0
chr7:1898200|1898390 hsa-miR-339-3p 1 0 0
chr7:1898200|1898390 hsa-miR-6871-3p 0 1 0
chr7:1898200|1898390 hsa-miR-6770-3p 1 0 0
chr7:1898200|1898390 hsa-miR-1911-5p 0 1 0
chr7:1898200|1898390 hsa-miR-329-5p 0 1 0
chr7:1898200|1898390 hsa-miR-4802-5p 1 0 0
chr7:1898200|1898390 hsa-miR-5002-3p 0 1 0
chr7:1898200|1898390 hsa-miR-4763-3p 1 0 0
chr7:1898200|1898390 hsa-miR-6893-5p 1 1 0
chr7:1898200|1898390 hsa-miR-6752-5p 1 0 0
chr7:1898200|1898390 hsa-miR-6851-5p 1 0 0
chr7:1898200|1898390 hsa-miR-4712-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:1898200|1898390
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence AEEAGGECRAEEPAAQGGFPDQDPGVPQGLLHAHRLPDRHHHGEPVPADLAVRRAPRRLPHLQ
Nucleotide Sequence GCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAA
CircID chr7:1898200|1898390
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence VESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFK
Nucleotide Sequence GTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG
CircID chr7:1898200|1898390
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence VLGVQRGQPVLVLRGDVDLVAGERVAGLAELLDLGLENLLEPLVLQLGTLHLLLQ
Nucleotide Sequence GTGCTCGGCGTACAGCGAGGTCAGCCGGTACTGGTTCTCCGTGGTGATGTCGATCTGGTAGCCGGTGAGCGTGTAGCAGGCCTTGCGGAACTCCTGGATCTTGGTCTGGAAAACCTCCTTGAGCCGCTGGTTCTTCAGCTCGGCACTCTCCACCTGCTTCTTCAG
CircID chr7:1898200|1898390
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MVLRGDVDLVAGERVAGLAELLDLGLENLLEPLVLQLGTLHLLLQ
Nucleotide Sequence CTGGTTCTCCGTGGTGATGTCGATCTGGTAGCCGGTGAGCGTGTAGCAGGCCTTGCGGAACTCCTGGATCTTGGTCTGGAAAACCTCCTTGAGCCGCTGGTTCTTCAGCTCGGCACTCTCCACCTGCTTCTTCAG
CircID chr7:1898200|1898390
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LKMRQSPGCSAYSEVSRYWFSVVMSIW
Nucleotide Sequence TTGAAGATGAGGCAGTCGCCTGGGTGCTCGGCGTACAGCGAGGTCAGCCGGTACTGGTTCTCCGTGGTGATGTCGATCTGGTAG
CircID chr7:1898200|1898390
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MRNSWILVWKTSLSRWFFSSALSTCFFS
Nucleotide Sequence TTGCGGAACTCCTGGATCTTGGTCTGGAAAACCTCCTTGAGCCGCTGGTTCTTCAGCTCGGCACTCTCCACCTGCTTCTTCAGC
CircID chr7:1898200|1898390
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MLHAHRLPDRHHHGEPVPADLAVRRAPRRLPHLQ
Nucleotide Sequence CTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAA
CircID chr7:1898200|1898390
ORF Type ORF5
Protein Length 63
Nucleotide Length 189
Protein Sequence LKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFK
Nucleotide Sequence CTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:1898200|1898390 MOV10 0 0 1
chr7:1898200|1898390 FUS 0 1 0
chr7:1898200|1898390 FAM120A 0 1 0
chr7:1898200|1898390 TBRG4 0 2 0
chr7:1898200|1898390 CELF2 2 2 0
chr7:1898200|1898390 PRPF8 0 1 0
chr7:1898200|1898390 TAF15 2 2 0
chr7:1898200|1898390 CPSF3 0 1 0
chr7:1898200|1898390 DGCR8 3 0 0
chr7:1898200|1898390 SRSF7 1 0 0
chr7:1898200|1898390 XPO5 0 1 0
chr7:1898200|1898390 NOP58 0 2 2
chr7:1898200|1898390 DDX54 0 2 0
chr7:1898200|1898390 SF3A3 0 1 0
chr7:1898200|1898390 HNRNPC 1 0 0
chr7:1898200|1898390 MSI1 1 2 0
chr7:1898200|1898390 IGF2BP1 2 0 0
chr7:1898200|1898390 IGF2BP2 0 0 1
chr7:1898200|1898390 TARDBP 14 6 0
chr7:1898200|1898390 RBFOX2 0 3 0
chr7:1898200|1898390 EIF4G2 11 4 0
chr7:1898200|1898390 CSTF2T 1 3 0
chr7:1898200|1898390 YBX3 0 2 0
chr7:1898200|1898390 DKC1 4 1 0
chr7:1898200|1898390 AGO2 2 2 0
chr7:1898200|1898390 EWSR1 0 1 0
chr7:1898200|1898390 EIF4A3 2 8 3
chr7:1898200|1898390 FBL 3 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab