CircRNA Information

General Information
circRNA Basic Information
CircID chr7:222093|222249
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCATAACACCCACTGAGAAGCTTTCTAAGAAACAAAACACAACAGCACAGCTGCCCTGGACCTCCAGACATCCCTGCGTGGCCTCCAGCCCTGCCCTGTCTCCTGACTTGCGCACTTCTGGCTCCCCACAGGCCCCTCCCTCCCGGGTGCCCAGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:222093|222249 hsa-miR-609 0 0 1
chr7:222093|222249 hsa-miR-612 1 0 1
chr7:222093|222249 hsa-miR-650 0 0 1
chr7:222093|222249 hsa-miR-933 0 0 1
chr7:222093|222249 hsa-miR-939-5p 0 0 1
chr7:222093|222249 hsa-miR-939-3p 0 0 1
chr7:222093|222249 hsa-miR-1231 0 0 1
chr7:222093|222249 hsa-miR-1321 0 0 1
chr7:222093|222249 hsa-miR-491-5p 0 0 1
chr7:222093|222249 hsa-miR-423-5p 0 0 1
chr7:222093|222249 hsa-miR-654-3p 0 0 1
chr7:222093|222249 hsa-miR-1207-5p 1 0 1
chr7:222093|222249 hsa-miR-1285 0 0 1
chr7:222093|222249 hsa-miR-516b 0 0 1
chr7:222093|222249 hsa-miR-637 1 0 0
chr7:222093|222249 hsa-miR-663a 1 0 0
chr7:222093|222249 hsa-miR-658 1 0 0
chr7:222093|222249 hsa-miR-762 1 0 0
chr7:222093|222249 hsa-miR-3141 1 0 0
chr7:222093|222249 hsa-miR-3147 1 0 0
chr7:222093|222249 hsa-miR-4298 1 0 0
chr7:222093|222249 hsa-miR-4270 1 0 0
chr7:222093|222249 hsa-miR-3937 1 0 0
chr7:222093|222249 hsa-miR-1268b 1 0 0
chr7:222093|222249 hsa-miR-378g 1 0 0
chr7:222093|222249 hsa-miR-4428 1 0 0
chr7:222093|222249 hsa-miR-4492 1 0 0
chr7:222093|222249 hsa-miR-4498 1 0 0
chr7:222093|222249 hsa-miR-4507 1 0 0
chr7:222093|222249 hsa-miR-4508 1 0 0
chr7:222093|222249 hsa-miR-4516 1 0 0
chr7:222093|222249 hsa-miR-4518 1 0 0
chr7:222093|222249 hsa-miR-1587 1 0 0
chr7:222093|222249 hsa-miR-3978 1 0 0
chr7:222093|222249 hsa-miR-4656 1 0 0
chr7:222093|222249 hsa-miR-4675 1 0 0
chr7:222093|222249 hsa-miR-4689 1 0 0
chr7:222093|222249 hsa-miR-4706 1 0 0
chr7:222093|222249 hsa-miR-4734 1 0 0
chr7:222093|222249 hsa-miR-4739 1 0 0
chr7:222093|222249 hsa-miR-4741 1 0 0
chr7:222093|222249 hsa-miR-5090 1 0 0
chr7:222093|222249 hsa-miR-5787 1 0 0
chr7:222093|222249 hsa-miR-6085 1 0 0
chr7:222093|222249 hsa-miR-6090 1 0 0
chr7:222093|222249 hsa-miR-6127 1 0 0
chr7:222093|222249 hsa-miR-6132 1 0 0
chr7:222093|222249 hsa-miR-6860 1 0 0
chr7:222093|222249 hsa-miR-8085 1 0 0
chr7:222093|222249 hsa-miR-8089 1 0 0
chr7:222093|222249 hsa-miR-135a-3p 1 0 0
chr7:222093|222249 hsa-miR-4731-5p 1 0 0
chr7:222093|222249 hsa-miR-504-3p 1 0 0
chr7:222093|222249 hsa-miR-4433a-3p 1 0 0
chr7:222093|222249 hsa-miR-6861-5p 1 0 0
chr7:222093|222249 hsa-miR-7106-5p 1 0 0
chr7:222093|222249 hsa-miR-6825-5p 1 0 0
chr7:222093|222249 hsa-miR-4687-3p 1 0 0
chr7:222093|222249 hsa-miR-139-3p 1 0 0
chr7:222093|222249 hsa-miR-6089 1 0 0
chr7:222093|222249 hsa-miR-6757-5p 1 0 0
chr7:222093|222249 hsa-miR-6880-5p 1 0 0
chr7:222093|222249 hsa-miR-4695-5p 1 0 0
chr7:222093|222249 hsa-miR-6746-5p 1 0 0
chr7:222093|222249 hsa-miR-6727-5p 1 0 0
chr7:222093|222249 hsa-miR-6806-5p 1 0 0
chr7:222093|222249 hsa-miR-6721-5p 1 0 0
chr7:222093|222249 hsa-miR-7845-5p 1 0 0
chr7:222093|222249 hsa-miR-6805-5p 1 0 0
chr7:222093|222249 hsa-miR-6827-5p 1 0 0
chr7:222093|222249 hsa-miR-6782-5p 1 0 0
chr7:222093|222249 hsa-miR-6810-5p 1 0 0
chr7:222093|222249 hsa-miR-5088-5p 1 0 0
chr7:222093|222249 hsa-miR-1229-5p 1 0 0
chr7:222093|222249 hsa-miR-4640-5p 1 0 0
chr7:222093|222249 hsa-miR-6753-5p 1 0 0
chr7:222093|222249 hsa-miR-885-3p 1 0 0
chr7:222093|222249 hsa-miR-1228-5p 1 0 0
chr7:222093|222249 hsa-miR-296-3p 1 0 0
chr7:222093|222249 hsa-miR-6771-5p 1 0 0
chr7:222093|222249 hsa-miR-6823-5p 1 0 0
chr7:222093|222249 hsa-miR-6749-5p 1 0 0
chr7:222093|222249 hsa-miR-4787-5p 1 0 0
chr7:222093|222249 hsa-miR-4446-3p 1 0 0
chr7:222093|222249 hsa-miR-149-3p 1 0 0
chr7:222093|222249 hsa-miR-937-5p 1 0 0
chr7:222093|222249 hsa-miR-6824-5p 1 0 0
chr7:222093|222249 hsa-miR-6800-5p 1 0 0
chr7:222093|222249 hsa-miR-6886-5p 1 0 0
chr7:222093|222249 hsa-miR-6781-5p 1 0 0
chr7:222093|222249 hsa-miR-1225-5p 1 0 0
chr7:222093|222249 hsa-miR-744-5p 1 0 0
chr7:222093|222249 hsa-miR-6770-3p 1 0 0
chr7:222093|222249 hsa-miR-1233-5p 1 0 0
chr7:222093|222249 hsa-miR-4763-3p 1 0 0
chr7:222093|222249 hsa-miR-6778-5p 1 0 0
chr7:222093|222249 hsa-miR-6893-5p 1 0 0
chr7:222093|222249 hsa-miR-6775-5p 1 0 0
chr7:222093|222249 hsa-miR-1343-5p 1 0 0
chr7:222093|222249 hsa-miR-5001-5p 1 0 0
chr7:222093|222249 hsa-miR-6726-5p 1 0 0
chr7:222093|222249 hsa-miR-6743-5p 1 0 0
chr7:222093|222249 hsa-miR-6756-5p 1 0 0
chr7:222093|222249 hsa-miR-6803-5p 1 0 0
chr7:222093|222249 hsa-miR-6813-5p 1 0 0
chr7:222093|222249 hsa-miR-1249-5p 1 0 0
chr7:222093|222249 hsa-miR-6722-3p 1 0 0
chr7:222093|222249 hsa-miR-6763-5p 1 0 0
chr7:222093|222249 hsa-miR-6774-5p 1 0 0
chr7:222093|222249 hsa-miR-6779-5p 1 0 0
chr7:222093|222249 hsa-miR-6797-5p 1 0 0
chr7:222093|222249 hsa-miR-6808-5p 1 0 0
chr7:222093|222249 hsa-miR-6879-5p 1 0 0
chr7:222093|222249 hsa-miR-3620-5p 1 0 0
chr7:222093|222249 hsa-miR-4728-5p 1 0 0
chr7:222093|222249 hsa-miR-5189-5p 1 0 0
chr7:222093|222249 hsa-miR-6836-5p 1 0 0
chr7:222093|222249 hsa-miR-10396a-5p 1 0 0
chr7:222093|222249 hsa-miR-10396b-5p 1 0 0
chr7:222093|222249 hsa-miR-1237-5p 1 0 0
chr7:222093|222249 hsa-miR-328-5p 1 0 0
chr7:222093|222249 hsa-miR-4632-5p 1 0 0
chr7:222093|222249 hsa-miR-4685-5p 1 0 0
chr7:222093|222249 hsa-miR-4726-5p 1 0 0
chr7:222093|222249 hsa-miR-4749-5p 1 0 0
chr7:222093|222249 hsa-miR-6735-5p 1 0 0
chr7:222093|222249 hsa-miR-6795-5p 1 0 0
chr7:222093|222249 hsa-miR-6846-5p 1 0 0
chr7:222093|222249 hsa-miR-6848-5p 1 0 0
chr7:222093|222249 hsa-miR-3187-5p 1 0 0
chr7:222093|222249 hsa-miR-4723-5p 1 0 0
chr7:222093|222249 hsa-miR-6885-5p 1 0 0
chr7:222093|222249 hsa-miR-10394-3p 1 0 0
chr7:222093|222249 hsa-miR-3940-5p 1 0 0
chr7:222093|222249 hsa-miR-4667-5p 1 0 0
chr7:222093|222249 hsa-miR-6762-5p 1 0 0
chr7:222093|222249 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:222093|222249
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MRSFLRNKTQQHSCPGPPDIPAWPPALPCLLTCALLAPHRPLPPGCPD
Nucleotide Sequence CTGAGAAGCTTTCTAAGAAACAAAACACAACAGCACAGCTGCCCTGGACCTCCAGACATCCCTGCGTGGCCTCCAGCCCTGCCCTGTCTCCTGACTTGCGCACTTCTGGCTCCCCACAGGCCCCTCCCTCCCGGGTGCCCAGAT
CircID chr7:222093|222249
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPWTSRHPCVASSPALSPDLRTSGSPQAPPSRVPR
Nucleotide Sequence CTGCCCTGGACCTCCAGACATCCCTGCGTGGCCTCCAGCCCTGCCCTGTCTCCTGACTTGCGCACTTCTGGCTCCCCACAGGCCCCTCCCTCCCGGGTGCCCAGA
CircID chr7:222093|222249
ORF Type ORF3
Protein Length 51
Nucleotide Length 153
Protein Sequence MGTREGGACGEPEVRKSGDRAGLEATQGCLEVQGSCAVVFCFLESFSVGVM
Nucleotide Sequence CTGGGCACCCGGGAGGGAGGGGCCTGTGGGGAGCCAGAAGTGCGCAAGTCAGGAGACAGGGCAGGGCTGGAGGCCACGCAGGGATGTCTGGAGGTCCAGGGCAGCTGTGCTGTTGTGTTTTGTTTCTTAGAAAGCTTCTCAGTGGGTGTTATG
CircID chr7:222093|222249
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MWGARSAQVRRQGRAGGHAGMSGGPGQLCCCVLFLRKLLSGCY
Nucleotide Sequence CTGTGGGGAGCCAGAAGTGCGCAAGTCAGGAGACAGGGCAGGGCTGGAGGCCACGCAGGGATGTCTGGAGGTCCAGGGCAGCTGTGCTGTTGTGTTTTGTTTCTTAGAAAGCTTCTCAGTGGGTGTTAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab