CircRNA Information

General Information
circRNA Basic Information
CircID chr7:22983944|22991139
Strand -
CircType exon
Host Gene ENSG00000122591.11;
Algorism find_circ;CIRI2;DCC;
Sequence GTTGAAGGTTTAGAACAGATGTGGAAAAATGTTTACTTCAGAGAAAGGGGTTGTGGAGGAATGGTTGTCAGAGTTTAAGTATTAGGTTACTCTTGATCAAATGACGGAAATGGAATGTTGCCTCGAGATCTTTTGTGTCATACTTTTGAAATATTGAAGAATGCCTTAATCTCGTCTTTATGTAAGCAGTTGCAGTAAAACCTTTTTTTCCCCCGTCGGGAGAATTGTGAAAGGTTTCCAAATAGTCCACATTTGCTTGCCCTTCTGACATTACCAGAAACATCTTTACCAAATTATGCCACAAATTTGAAAGACAAGAGTTCTTTAGTTTCATCTCTCTATAAAGTTATCCAGGAGCCACAAAGTGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:22983944|22991139 hsa-miR-208a-5p 0 0 1
chr7:22983944|22991139 hsa-miR-208a-3p 0 0 1
chr7:22983944|22991139 hsa-miR-340-5p 0 0 1
chr7:22983944|22991139 hsa-miR-340-3p 0 0 1
chr7:22983944|22991139 hsa-miR-488-5p 0 0 1
chr7:22983944|22991139 hsa-miR-488-3p 0 0 1
chr7:22983944|22991139 hsa-miR-493-5p 0 0 1
chr7:22983944|22991139 hsa-miR-493-3p 0 0 1
chr7:22983944|22991139 hsa-miR-494-5p 0 0 1
chr7:22983944|22991139 hsa-miR-494-3p 0 0 1
chr7:22983944|22991139 hsa-miR-520g-5p 0 0 1
chr7:22983944|22991139 hsa-miR-520g-3p 0 0 1
chr7:22983944|22991139 hsa-miR-520h 0 0 1
chr7:22983944|22991139 hsa-miR-561-5p 0 0 1
chr7:22983944|22991139 hsa-miR-561-3p 0 0 1
chr7:22983944|22991139 hsa-miR-641 0 0 1
chr7:22983944|22991139 hsa-miR-765 0 0 1
chr7:22983944|22991139 hsa-miR-665 0 0 1
chr7:22983944|22991139 hsa-miR-208b-5p 0 0 1
chr7:22983944|22991139 hsa-miR-208b-3p 0 0 1
chr7:22983944|22991139 hsa-miR-142-5p 0 0 1
chr7:22983944|22991139 hsa-miR-576-3p 0 1 1
chr7:22983944|22991139 hsa-miR-323-3p 0 0 1
chr7:22983944|22991139 hsa-miR-453 0 0 1
chr7:22983944|22991139 hsa-miR-499-5p 0 0 1
chr7:22983944|22991139 hsa-miR-3154 1 1 0
chr7:22983944|22991139 hsa-miR-3936 0 1 0
chr7:22983944|22991139 hsa-miR-4464 0 1 0
chr7:22983944|22991139 hsa-miR-4748 0 1 0
chr7:22983944|22991139 hsa-miR-5194 1 0 0
chr7:22983944|22991139 hsa-miR-6124 1 0 0
chr7:22983944|22991139 hsa-miR-12128 1 1 0
chr7:22983944|22991139 hsa-miR-9-5p 0 1 0
chr7:22983944|22991139 hsa-miR-6894-5p 1 0 0
chr7:22983944|22991139 hsa-miR-766-5p 0 1 0
chr7:22983944|22991139 hsa-miR-6804-5p 1 0 0
chr7:22983944|22991139 hsa-miR-6730-5p 1 0 0
chr7:22983944|22991139 hsa-miR-505-5p 0 1 0
chr7:22983944|22991139 hsa-miR-6782-5p 1 0 0
chr7:22983944|22991139 hsa-miR-30b-3p 1 0 0
chr7:22983944|22991139 hsa-miR-4764-5p 0 1 0
chr7:22983944|22991139 hsa-miR-758-5p 0 1 0
chr7:22983944|22991139 hsa-miR-6752-5p 1 0 0
chr7:22983944|22991139 hsa-miR-7110-5p 1 0 0
chr7:22983944|22991139 hsa-miR-6797-5p 1 0 0
chr7:22983944|22991139 hsa-miR-10526-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:22983944|22991139
ORF Type ORF1
Protein Length 89
Nucleotide Length 267
Protein Sequence MKLKNSCLSNLWHNLVKMFLVMSEGQANVDYLETFHNSPDGGKKGFTATAYIKTRLRHSSIFQKYDTKDLEATFHFRHLIKSNLILKL*
Nucleotide Sequence ATGAAACTAAAGAACTCTTGTCTTTCAAATTTGTGGCATAATTTGGTAAAGATGTTTCTGGTAATGTCAGAAGGGCAAGCAAATGTGGACTATTTGGAAACCTTTCACAATTCTCCCGACGGGGGAAAAAAAGGTTTTACTGCAACTGCTTACATAAAGACGAGATTAAGGCATTCTTCAATATTTCAAAAGTATGACACAAAAGATCTCGAGGCAACATTCCATTTCCGTCATTTGATCAAGAGTAACCTAATACTTAAACTCTGA
CircID chr7:22983944|22991139
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSE
Nucleotide Sequence ATGTTTACTTCAGAGAAAGGGGTTGTGGAGGAATGGTTGTCAGAGTTTAAGACATTACCAGAAACATCTTTACCAAATTATGCCACAAATTTGAAAGACAAGAGTTCTTTAGTTTCATCTCTCTATAAAGTTATCCAGGAGCCACAAAGTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:22983944|22991139 ELAVL1 4 4 1
chr7:22983944|22991139 PRPF8 0 1 1
chr7:22983944|22991139 FUS 1 0 0
chr7:22983944|22991139 DGCR8 0 1 0
chr7:22983944|22991139 SRSF7 1 0 0
chr7:22983944|22991139 SRSF1 0 3 0
chr7:22983944|22991139 NOP58 0 1 0
chr7:22983944|22991139 U2AF2 5 5 0
chr7:22983944|22991139 PRKRA 0 1 0
chr7:22983944|22991139 DDX3X 1 0 2
chr7:22983944|22991139 XRN2 0 1 0
chr7:22983944|22991139 SMNDC1 1 0 0
chr7:22983944|22991139 MSI1 1 0 0
chr7:22983944|22991139 HNRNPA1 0 1 0
chr7:22983944|22991139 IGF2BP2 1 4 2
chr7:22983944|22991139 BUD13 0 1 1
chr7:22983944|22991139 EIF4G2 1 0 0
chr7:22983944|22991139 TIA1 0 1 0
chr7:22983944|22991139 TIAL1 0 1 0
chr7:22983944|22991139 AGO2 0 2 1
chr7:22983944|22991139 EIF4A3 1 0 2
chr7:22983944|22991139 FBL 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab