CircRNA Information

General Information
circRNA Basic Information
CircID chr7:26192542|26193598
Strand -
CircType exon
Host Gene ENSG00000122566.19;
Algorism CIRI2;
Sequence CCCCACTTCCTCCACTGCCTCCTGGACCATAGTTTCCTCCACCATATGGTCCCCCCATGTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAGAAGGTTGCTGGTTATAATTTCCAAAATCATTGTAATTTCCACTTCCATAATTTCCTATTAAAAAATTGGAATACTCAGAACAATACAAACATTAAACCAAGGACTTAGGACAAAGCTCCCATAAAAACAAATAAAAGCAAACACTTATCCACAAATTTTATGGGCATCTAGTGACAAACATGGAAACAAAAGATCAAGTGTTACAAAGACATTAATTCCAAATTCCCACATAAAGGTTGCAGGTGAATTTATTACCTCCTCCATAGTTGTCATAACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:26192542|26193598 hsa-miR-34a-5p 0 0 1
chr7:26192542|26193598 hsa-miR-34a-3p 0 0 1
chr7:26192542|26193598 hsa-miR-141-5p 0 0 1
chr7:26192542|26193598 hsa-miR-141-3p 0 0 1
chr7:26192542|26193598 hsa-miR-200a-5p 0 0 1
chr7:26192542|26193598 hsa-miR-200a-3p 0 0 1
chr7:26192542|26193598 hsa-miR-425-5p 0 0 1
chr7:26192542|26193598 hsa-miR-425-3p 0 0 1
chr7:26192542|26193598 hsa-miR-449a 0 0 1
chr7:26192542|26193598 hsa-miR-511-5p 0 0 1
chr7:26192542|26193598 hsa-miR-511-3p 0 0 1
chr7:26192542|26193598 hsa-miR-496 0 0 1
chr7:26192542|26193598 hsa-miR-587 0 0 1
chr7:26192542|26193598 hsa-miR-595 0 0 1
chr7:26192542|26193598 hsa-miR-606 0 0 1
chr7:26192542|26193598 hsa-miR-633 0 0 1
chr7:26192542|26193598 hsa-miR-634 0 1 1
chr7:26192542|26193598 hsa-miR-650 1 0 1
chr7:26192542|26193598 hsa-miR-449b-5p 0 0 1
chr7:26192542|26193598 hsa-miR-449b-3p 0 0 1
chr7:26192542|26193598 hsa-miR-668-5p 0 0 1
chr7:26192542|26193598 hsa-miR-668-3p 0 0 1
chr7:26192542|26193598 hsa-miR-765 0 0 1
chr7:26192542|26193598 hsa-miR-665 1 1 1
chr7:26192542|26193598 hsa-miR-873-5p 0 0 1
chr7:26192542|26193598 hsa-miR-873-3p 0 0 1
chr7:26192542|26193598 hsa-miR-920 0 0 1
chr7:26192542|26193598 hsa-miR-1261 0 0 1
chr7:26192542|26193598 hsa-miR-1827 0 0 1
chr7:26192542|26193598 hsa-miR-28-3p 0 0 1
chr7:26192542|26193598 hsa-miR-299-3p 0 0 1
chr7:26192542|26193598 hsa-miR-876-3p 0 0 1
chr7:26192542|26193598 hsa-miR-409-3p 0 0 1
chr7:26192542|26193598 hsa-miR-299-5p 0 0 1
chr7:26192542|26193598 hsa-miR-34c-5p 0 1 1
chr7:26192542|26193598 hsa-miR-323-5p 0 0 1
chr7:26192542|26193598 hsa-miR-9 0 0 1
chr7:26192542|26193598 hsa-miR-549 0 0 1
chr7:26192542|26193598 hsa-miR-194 0 0 1
chr7:26192542|26193598 hsa-miR-601 1 1 0
chr7:26192542|26193598 hsa-miR-4263 1 1 0
chr7:26192542|26193598 hsa-miR-4281 1 0 0
chr7:26192542|26193598 hsa-miR-3612 1 1 0
chr7:26192542|26193598 hsa-miR-3915 0 1 0
chr7:26192542|26193598 hsa-miR-3937 1 0 0
chr7:26192542|26193598 hsa-miR-4450 1 0 0
chr7:26192542|26193598 hsa-miR-4466 1 0 0
chr7:26192542|26193598 hsa-miR-4467 1 0 0
chr7:26192542|26193598 hsa-miR-4481 1 0 0
chr7:26192542|26193598 hsa-miR-4496 0 1 0
chr7:26192542|26193598 hsa-miR-4657 1 0 0
chr7:26192542|26193598 hsa-miR-4688 1 0 0
chr7:26192542|26193598 hsa-miR-4689 1 0 0
chr7:26192542|26193598 hsa-miR-4739 1 0 0
chr7:26192542|26193598 hsa-miR-5090 1 0 0
chr7:26192542|26193598 hsa-miR-5192 1 0 0
chr7:26192542|26193598 hsa-miR-6165 0 1 0
chr7:26192542|26193598 hsa-miR-12115 0 1 0
chr7:26192542|26193598 hsa-miR-4433b-3p 1 0 0
chr7:26192542|26193598 hsa-miR-6734-5p 1 0 0
chr7:26192542|26193598 hsa-miR-4433a-3p 1 0 0
chr7:26192542|26193598 hsa-miR-6765-5p 1 0 0
chr7:26192542|26193598 hsa-miR-8071 1 0 0
chr7:26192542|26193598 hsa-miR-766-5p 0 1 0
chr7:26192542|26193598 hsa-miR-6833-5p 1 0 0
chr7:26192542|26193598 hsa-miR-7114-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6880-5p 1 1 0
chr7:26192542|26193598 hsa-miR-7847-3p 1 1 0
chr7:26192542|26193598 hsa-miR-4695-5p 1 1 0
chr7:26192542|26193598 hsa-miR-7845-5p 0 1 0
chr7:26192542|26193598 hsa-miR-6805-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6798-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6786-5p 1 0 0
chr7:26192542|26193598 hsa-miR-4738-3p 1 0 0
chr7:26192542|26193598 hsa-miR-4640-5p 1 0 0
chr7:26192542|26193598 hsa-let-7b-5p 0 1 0
chr7:26192542|26193598 hsa-miR-149-3p 1 0 0
chr7:26192542|26193598 hsa-miR-4776-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6826-5p 1 0 0
chr7:26192542|26193598 hsa-miR-4772-3p 0 1 0
chr7:26192542|26193598 hsa-miR-6773-3p 1 0 0
chr7:26192542|26193598 hsa-miR-597-5p 0 1 0
chr7:26192542|26193598 hsa-miR-98-5p 0 1 0
chr7:26192542|26193598 hsa-miR-676-3p 1 1 0
chr7:26192542|26193598 hsa-miR-10400-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6778-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6812-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6865-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6726-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6743-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6754-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6756-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6851-5p 1 0 0
chr7:26192542|26193598 hsa-miR-10401-5p 1 0 0
chr7:26192542|26193598 hsa-miR-11181-3p 1 1 0
chr7:26192542|26193598 hsa-miR-1249-5p 1 0 0
chr7:26192542|26193598 hsa-miR-4728-5p 1 0 0
chr7:26192542|26193598 hsa-miR-328-5p 1 0 0
chr7:26192542|26193598 hsa-miR-449c-5p 0 1 0
chr7:26192542|26193598 hsa-miR-6795-5p 1 1 0
chr7:26192542|26193598 hsa-miR-6846-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6848-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6858-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6887-5p 1 1 0
chr7:26192542|26193598 hsa-miR-939-5p 1 0 0
chr7:26192542|26193598 hsa-miR-6849-5p 1 0 0
chr7:26192542|26193598 hsa-miR-5591-5p 0 1 0
chr7:26192542|26193598 hsa-miR-487a-5p 0 1 0
chr7:26192542|26193598 hsa-miR-549a-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:26192542|26193598
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MDHSFLHHMVPPCSCYHQSFHSSLDRS
Nucleotide Sequence CTGGACCATAGTTTCCTCCACCATATGGTCCCCCCATGTTCCTGCTACCACCAAAGTTTCCACTCTTCATTGGACCGTAGTTAG
CircID chr7:26192542|26193598
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MTTMEEVINSPATFMWEFGINVFVTLDLLFPCLSLDAHKICG
Nucleotide Sequence ATGACAACTATGGAGGAGGTAATAAATTCACCTGCAACCTTTATGTGGGAATTTGGAATTAATGTCTTTGTAACACTTGATCTTTTGTTTCCATGTTTGTCACTAGATGCCCATAAAATTTGTGGATAA
CircID chr7:26192542|26193598
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MVVAGTWGDHMVEETMVQEAVEEVG
Nucleotide Sequence TTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGG
CircID chr7:26192542|26193598
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MYCSEYSNFLIGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSG
Nucleotide Sequence TTGTATTGTTCTGAGTATTCCAATTTTTTAATAGGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab