CircRNA Information

General Information
circRNA Basic Information
CircID chr7:26196557|26196859
Strand -
CircType exon
Host Gene ENSG00000122566.19;
Algorism CIRI2;
Sequence CTCCTCTTCCACTCCTAGAACTCTGAACTTCCTGCATTTCTTGTCTAGACAAAGCCTTTCTTACTTCTGCATTATGACCATTGATGGTATGGTATTTCTGCACTGGAATGAAAAATTCAGACTCCTTTTAAATTAAATCAACAATATTAAGCAGCTTCAAAAGTTTACCTTTCAATAAAGTTACAGATGTTAACATACACAAAATTGAATACACTGGAAAAAAACAGTACATTTGTGGTTAGACACTTACATACGATTTTATCCACAGGATCATGGTCATCAAAAGTAACAAAGCCAAAGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:26196557|26196859 hsa-miR-148a-5p 0 0 1
chr7:26196557|26196859 hsa-miR-148a-3p 0 0 1
chr7:26196557|26196859 hsa-miR-152-5p 0 0 1
chr7:26196557|26196859 hsa-miR-152-3p 0 0 1
chr7:26196557|26196859 hsa-miR-380-5p 0 0 1
chr7:26196557|26196859 hsa-miR-380-3p 0 0 1
chr7:26196557|26196859 hsa-miR-148b-5p 0 0 1
chr7:26196557|26196859 hsa-miR-148b-3p 0 0 1
chr7:26196557|26196859 hsa-miR-452-5p 0 0 1
chr7:26196557|26196859 hsa-miR-452-3p 0 0 1
chr7:26196557|26196859 hsa-miR-488-5p 0 0 1
chr7:26196557|26196859 hsa-miR-488-3p 0 0 1
chr7:26196557|26196859 hsa-miR-567 0 0 1
chr7:26196557|26196859 hsa-miR-591 0 0 1
chr7:26196557|26196859 hsa-miR-595 0 0 1
chr7:26196557|26196859 hsa-miR-599 0 0 1
chr7:26196557|26196859 hsa-miR-630 0 0 1
chr7:26196557|26196859 hsa-miR-653-5p 0 0 1
chr7:26196557|26196859 hsa-miR-653-3p 0 0 1
chr7:26196557|26196859 hsa-miR-1298-5p 0 0 1
chr7:26196557|26196859 hsa-miR-1298-3p 0 0 1
chr7:26196557|26196859 hsa-miR-298 1 0 1
chr7:26196557|26196859 hsa-miR-889-5p 0 0 1
chr7:26196557|26196859 hsa-miR-889-3p 0 0 1
chr7:26196557|26196859 hsa-miR-297 0 0 1
chr7:26196557|26196859 hsa-miR-1286 0 0 1
chr7:26196557|26196859 hsa-miR-1261 0 0 1
chr7:26196557|26196859 hsa-miR-548m 0 0 1
chr7:26196557|26196859 hsa-miR-1825 0 0 1
chr7:26196557|26196859 hsa-miR-127-5p 1 0 1
chr7:26196557|26196859 hsa-miR-145-5p 0 0 1
chr7:26196557|26196859 hsa-miR-199a-5p 0 0 1
chr7:26196557|26196859 hsa-miR-199b-5p 0 0 1
chr7:26196557|26196859 hsa-miR-7 0 0 1
chr7:26196557|26196859 hsa-miR-760 1 0 0
chr7:26196557|26196859 hsa-miR-3188 1 0 0
chr7:26196557|26196859 hsa-miR-4270 1 0 0
chr7:26196557|26196859 hsa-miR-4502 0 1 0
chr7:26196557|26196859 hsa-miR-5093 1 0 0
chr7:26196557|26196859 hsa-miR-548ax 0 1 0
chr7:26196557|26196859 hsa-miR-6127 1 0 0
chr7:26196557|26196859 hsa-miR-12128 1 0 0
chr7:26196557|26196859 hsa-miR-4433b-3p 0 1 0
chr7:26196557|26196859 hsa-miR-4433a-3p 0 1 0
chr7:26196557|26196859 hsa-miR-7847-3p 1 0 0
chr7:26196557|26196859 hsa-miR-4653-3p 1 0 0
chr7:26196557|26196859 hsa-miR-6760-5p 1 0 0
chr7:26196557|26196859 hsa-miR-2467-3p 1 0 0
chr7:26196557|26196859 hsa-miR-3127-5p 1 0 0
chr7:26196557|26196859 hsa-miR-1287-3p 0 1 0
chr7:26196557|26196859 hsa-miR-1207-5p 1 0 0
chr7:26196557|26196859 hsa-miR-6754-5p 1 0 0
chr7:26196557|26196859 hsa-miR-6879-5p 1 0 0
chr7:26196557|26196859 hsa-miR-4436b-3p 1 0 0
chr7:26196557|26196859 hsa-miR-6511a-5p 1 0 0
chr7:26196557|26196859 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:26196557|26196859
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MLTYTKLNTLEKNSTFVVRHLHTILSTGSWSSKVTKPKP
Nucleotide Sequence ATGTTAACATACACAAAATTGAATACACTGGAAAAAAACAGTACATTTGTGGTTAGACACTTACATACGATTTTATCCACAGGATCATGGTCATCAAAAGTAACAAAGCCAAAGCCT
CircID chr7:26196557|26196859
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MNFLHFLSRQSLSYFCIMTIDGMVFLHWNEKFRLLLN
Nucleotide Sequence CTGAACTTCCTGCATTTCTTGTCTAGACAAAGCCTTTCTTACTTCTGCATTATGACCATTGATGGTATGGTATTTCTGCACTGGAATGAAAAATTCAGACTCCTTTTAAATTAA
CircID chr7:26196557|26196859
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MYCFFPVYSILCMLTSVTLLKGKLLKLLNIVDLI
Nucleotide Sequence ATGTACTGTTTTTTTCCAGTGTATTCAATTTTGTGTATGTTAACATCTGTAACTTTATTGAAAGGTAAACTTTTGAAGCTGCTTAATATTGTTGATTTAATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab