CircRNA Information

General Information
circRNA Basic Information
CircID chr7:26197315|26197671
Strand -
CircType exon
Host Gene ENSG00000122566.19;
Algorism CIRI2;
Sequence CTCTCTTGCTACAGCACGTTTTGGCTCAACTACTCTCCCATCAATTGAATGAGGTCTTGCAGCCATGGCAGCATCAACCTCAGCCATGGATGAAAAAGTTACAAAACCAAATCCTCTTGATCTTTTGCTTGCAGGATCCCTCATTACCTTTCAAACCAAAGGGTAAACTTTAGCATTTAATCTCATTATAGCTTATAAGTGAAGTCATAATAGAATTTTTTACTATGCTGATAGTTATTTCCTCCATGATTCACTTAACATACAGCTAAAAGACTAATATCCAGTAACAATTCAGTAATTTACATACCACACAGTCTGTAAGCTTTCCCCATTGTTCGTAGTAGTTCCTCAAACTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:26197315|26197671 hsa-miR-380-5p 0 0 1
chr7:26197315|26197671 hsa-miR-380-3p 0 0 1
chr7:26197315|26197671 hsa-miR-335-5p 0 0 1
chr7:26197315|26197671 hsa-miR-335-3p 0 0 1
chr7:26197315|26197671 hsa-miR-488-5p 0 0 1
chr7:26197315|26197671 hsa-miR-488-3p 0 0 1
chr7:26197315|26197671 hsa-miR-561-5p 0 0 1
chr7:26197315|26197671 hsa-miR-561-3p 0 0 1
chr7:26197315|26197671 hsa-miR-567 0 0 1
chr7:26197315|26197671 hsa-miR-600 0 0 1
chr7:26197315|26197671 hsa-miR-604 0 0 1
chr7:26197315|26197671 hsa-miR-606 0 0 1
chr7:26197315|26197671 hsa-miR-617 0 0 1
chr7:26197315|26197671 hsa-miR-647 0 0 1
chr7:26197315|26197671 hsa-miR-659-5p 0 0 1
chr7:26197315|26197671 hsa-miR-659-3p 0 0 1
chr7:26197315|26197671 hsa-miR-765 0 0 1
chr7:26197315|26197671 hsa-miR-892a 0 0 1
chr7:26197315|26197671 hsa-miR-297 0 0 1
chr7:26197315|26197671 hsa-miR-1304-5p 0 0 1
chr7:26197315|26197671 hsa-miR-1304-3p 0 0 1
chr7:26197315|26197671 hsa-miR-1243 0 0 1
chr7:26197315|26197671 hsa-miR-548m 0 0 1
chr7:26197315|26197671 hsa-miR-548p 0 0 1
chr7:26197315|26197671 hsa-miR-1224-5p 0 0 1
chr7:26197315|26197671 hsa-miR-490-5p 0 0 1
chr7:26197315|26197671 hsa-miR-1244 0 0 1
chr7:26197315|26197671 hsa-miR-9 0 0 1
chr7:26197315|26197671 hsa-miR-644 0 0 1
chr7:26197315|26197671 hsa-miR-219-2-3p 0 0 1
chr7:26197315|26197671 hsa-miR-147 0 0 1
chr7:26197315|26197671 hsa-miR-610 1 0 0
chr7:26197315|26197671 hsa-miR-3153 1 0 0
chr7:26197315|26197671 hsa-miR-4523 1 0 0
chr7:26197315|26197671 hsa-miR-4537 1 0 0
chr7:26197315|26197671 hsa-miR-4648 1 0 0
chr7:26197315|26197671 hsa-miR-4682 1 0 0
chr7:26197315|26197671 hsa-miR-4689 1 0 0
chr7:26197315|26197671 hsa-miR-4748 1 0 0
chr7:26197315|26197671 hsa-miR-4784 1 0 0
chr7:26197315|26197671 hsa-miR-6081 1 0 0
chr7:26197315|26197671 hsa-miR-8085 1 0 0
chr7:26197315|26197671 hsa-miR-3926 1 0 0
chr7:26197315|26197671 hsa-miR-6807-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6730-5p 1 0 0
chr7:26197315|26197671 hsa-miR-3928-3p 1 0 0
chr7:26197315|26197671 hsa-miR-1226-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6834-5p 1 0 0
chr7:26197315|26197671 hsa-miR-149-3p 1 0 0
chr7:26197315|26197671 hsa-miR-937-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6824-5p 1 0 0
chr7:26197315|26197671 hsa-miR-219a-2-3p 1 0 0
chr7:26197315|26197671 hsa-miR-6752-5p 1 0 0
chr7:26197315|26197671 hsa-miR-1249-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6875-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6780b-5p 1 0 0
chr7:26197315|26197671 hsa-miR-4725-3p 1 0 0
chr7:26197315|26197671 hsa-miR-6858-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6731-5p 1 0 0
chr7:26197315|26197671 hsa-miR-6856-5p 1 0 0
chr7:26197315|26197671 hsa-miR-1914-3p 1 0 0
chr7:26197315|26197671 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:26197315|26197671
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MAASTSAMDEKVTKPNPLDLLLAGSLITFQTKG
Nucleotide Sequence ATGGCAGCATCAACCTCAGCCATGGATGAAAAAGTTACAAAACCAAATCCTCTTGATCTTTTGCTTGCAGGATCCCTCATTACCTTTCAAACCAAAGGGTAA
CircID chr7:26197315|26197671
ORF Type ORF2
Protein Length 55
Nucleotide Length 168
Protein Sequence MLQHVLAQLLSHQLNEVLQPWQHQPQPWMKKLQNQILLIFCLQDPSLPFKPKGKL
Nucleotide Sequence TTGCTACAGCACGTTTTGGCTCAACTACTCTCCCATCAATTGAATGAGGTCTTGCAGCCATGGCAGCATCAACCTCAGCCATGGATGAAAAAGTTACAAAACCAAATCCTCTTGATCTTTTGCTTGCAGGATCCCTCATTACCTTTCAAACCAAAGGGTAAACTTTAG
CircID chr7:26197315|26197671
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE
Nucleotide Sequence ATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTAGTTGAGCCAAAACGTGCTGTAGCAAGAGAG
CircID chr7:26197315|26197671
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MRNYYEQWGKLTDCVVCKLLNCYWILVF
Nucleotide Sequence TTGAGGAACTACTACGAACAATGGGGAAAGCTTACAGACTGTGTGGTATGTAAATTACTGAATTGTTACTGGATATTAGTCTTTTAG
CircID chr7:26197315|26197671
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MEEITISIVKNSIMTSLISYNEIKC
Nucleotide Sequence ATGGAGGAAATAACTATCAGCATAGTAAAAAATTCTATTATGACTTCACTTATAAGCTATAATGAGATTAAATGCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab