CircRNA Information

General Information
circRNA Basic Information
CircID chr7:43639449|43640649
Strand -
CircType exon
Host Gene ENSG00000106603.17;
Algorism find_circ;CIRI2;DCC;
Sequence TTGAAGATTCCTGTCTCTGGATCCAAATCAGAGGGCCTTCTCTACGTCCACTCATCCAGAGGTGGCCCCTTTCAGAGGTGGCACCTTGACGAGGTCTTTTTAGAGCTCAAGGATGGTCAGCAGATTCCTGTGTTCAAGCTCAGTGGGGAAAACGGTGATGAAGTGAAAAAGGAGTAGAGACGACCCAGAAGACCCAGCTTGCTTCTAGTCCATCCTTCCCTCATCTCTACCATATGGCCACTGGGGTGGTGGCCCATCTCAGTGACAGACACTCCTGCAACCCAGTTTTCCAGCCACCAGTGGGATGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:43639449|43640649 hsa-miR-214-5p 0 0 1
chr7:43639449|43640649 hsa-miR-214-3p 0 0 1
chr7:43639449|43640649 hsa-miR-493-5p 0 0 1
chr7:43639449|43640649 hsa-miR-493-3p 0 0 1
chr7:43639449|43640649 hsa-miR-498-5p 0 0 1
chr7:43639449|43640649 hsa-miR-498-3p 0 0 1
chr7:43639449|43640649 hsa-miR-551a 0 0 1
chr7:43639449|43640649 hsa-miR-553 0 0 1
chr7:43639449|43640649 hsa-miR-554 0 0 1
chr7:43639449|43640649 hsa-miR-551b-5p 0 0 1
chr7:43639449|43640649 hsa-miR-551b-3p 0 0 1
chr7:43639449|43640649 hsa-miR-573 0 0 1
chr7:43639449|43640649 hsa-miR-588 0 1 1
chr7:43639449|43640649 hsa-miR-608 0 1 1
chr7:43639449|43640649 hsa-miR-922 0 0 1
chr7:43639449|43640649 hsa-miR-663b 0 1 1
chr7:43639449|43640649 hsa-miR-1293 1 1 1
chr7:43639449|43640649 hsa-miR-1303 0 0 1
chr7:43639449|43640649 hsa-miR-491-5p 0 1 1
chr7:43639449|43640649 hsa-miR-342-5p 0 0 1
chr7:43639449|43640649 hsa-miR-483-3p 0 1 1
chr7:43639449|43640649 hsa-miR-542-3p 0 0 1
chr7:43639449|43640649 hsa-miR-642 0 0 1
chr7:43639449|43640649 hsa-miR-2110 1 1 0
chr7:43639449|43640649 hsa-miR-3132 0 1 0
chr7:43639449|43640649 hsa-miR-3139 1 0 0
chr7:43639449|43640649 hsa-miR-3153 1 1 0
chr7:43639449|43640649 hsa-miR-4271 1 0 0
chr7:43639449|43640649 hsa-miR-4328 0 1 0
chr7:43639449|43640649 hsa-miR-4518 0 1 0
chr7:43639449|43640649 hsa-miR-4751 0 1 0
chr7:43639449|43640649 hsa-miR-9500 1 0 0
chr7:43639449|43640649 hsa-miR-7155-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6720-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6854-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6728-5p 1 0 0
chr7:43639449|43640649 hsa-miR-6746-5p 1 0 0
chr7:43639449|43640649 hsa-miR-593-5p 1 0 0
chr7:43639449|43640649 hsa-miR-145-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6742-5p 1 1 0
chr7:43639449|43640649 hsa-miR-6868-3p 0 1 0
chr7:43639449|43640649 hsa-miR-6760-5p 1 0 0
chr7:43639449|43640649 hsa-miR-3194-5p 1 1 0
chr7:43639449|43640649 hsa-miR-6786-5p 1 0 0
chr7:43639449|43640649 hsa-miR-5088-5p 1 1 0
chr7:43639449|43640649 hsa-miR-6734-3p 0 1 0
chr7:43639449|43640649 hsa-miR-5586-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6865-5p 1 1 0
chr7:43639449|43640649 hsa-miR-6737-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6756-5p 1 0 0
chr7:43639449|43640649 hsa-miR-6815-5p 1 1 0
chr7:43639449|43640649 hsa-miR-6819-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6851-5p 1 0 0
chr7:43639449|43640649 hsa-miR-6788-5p 1 0 0
chr7:43639449|43640649 hsa-miR-6780b-5p 1 0 0
chr7:43639449|43640649 hsa-miR-328-5p 1 0 0
chr7:43639449|43640649 hsa-miR-4725-3p 1 0 0
chr7:43639449|43640649 hsa-miR-4745-5p 1 0 0
chr7:43639449|43640649 hsa-miR-6790-5p 1 0 0
chr7:43639449|43640649 hsa-miR-769-3p 1 0 0
chr7:43639449|43640649 hsa-miR-3130-5p 0 1 0
chr7:43639449|43640649 hsa-miR-6891-3p 0 1 0
chr7:43639449|43640649 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:43639449|43640649
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MENWVAGVSVTEMGHHPSGHMVEMREGWTRSKLGLLGRLYSFFTSSPFSPLSLNTGIC
Nucleotide Sequence CTGGAAAACTGGGTTGCAGGAGTGTCTGTCACTGAGATGGGCCACCACCCCAGTGGCCATATGGTAGAGATGAGGGAAGGATGGACTAGAAGCAAGCTGGGTCTTCTGGGTCGTCTCTACTCCTTTTTCACTTCATCACCGTTTTCCCCACTGAGCTTGAACACAGGAATCTGCTGA
CircID chr7:43639449|43640649
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MLLVHPSLISTIWPLGWWPISVTDTPATQFSSHQWDD
Nucleotide Sequence TTGCTTCTAGTCCATCCTTCCCTCATCTCTACCATATGGCCACTGGGGTGGTGGCCCATCTCAGTGACAGACACTCCTGCAACCCAGTTTTCCAGCCACCAGTGGGATGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:43639449|43640649 FMR1 0 2 0
chr7:43639449|43640649 NOP56 0 1 1
chr7:43639449|43640649 MOV10 0 8 3
chr7:43639449|43640649 ELAVL1 19 22 3
chr7:43639449|43640649 TIAL1 0 2 0
chr7:43639449|43640649 SF3B4 0 1 0
chr7:43639449|43640649 FAM120A 0 2 1
chr7:43639449|43640649 KHDRBS1 0 2 0
chr7:43639449|43640649 CELF2 0 2 0
chr7:43639449|43640649 PRPF8 0 5 3
chr7:43639449|43640649 YTHDF1 0 0 1
chr7:43639449|43640649 UPF1 0 10 1
chr7:43639449|43640649 TAF15 1 1 0
chr7:43639449|43640649 CAPRIN1 0 2 0
chr7:43639449|43640649 CPSF7 0 1 0
chr7:43639449|43640649 CPSF6 0 1 0
chr7:43639449|43640649 NUDT21 1 0 0
chr7:43639449|43640649 TIA1 0 3 0
chr7:43639449|43640649 CPSF3 1 0 0
chr7:43639449|43640649 CPSF1 0 1 0
chr7:43639449|43640649 FUS 1 4 0
chr7:43639449|43640649 SRSF7 0 0 2
chr7:43639449|43640649 SRSF1 1 5 5
chr7:43639449|43640649 NOP58 1 1 6
chr7:43639449|43640649 U2AF1 3 8 6
chr7:43639449|43640649 U2AF2 9 33 5
chr7:43639449|43640649 SRSF9 0 0 1
chr7:43639449|43640649 ZFP36 0 1 0
chr7:43639449|43640649 DDX54 0 2 9
chr7:43639449|43640649 RBM10 2 1 0
chr7:43639449|43640649 PCBP2 0 1 1
chr7:43639449|43640649 HNRNPA2B1 0 1 0
chr7:43639449|43640649 SF3A3 0 1 0
chr7:43639449|43640649 FIP1L1 0 1 0
chr7:43639449|43640649 PTBP1 5 10 0
chr7:43639449|43640649 HNRNPC 25 22 2
chr7:43639449|43640649 HNRNPD 0 3 0
chr7:43639449|43640649 TRA2A 0 1 0
chr7:43639449|43640649 DKC1 0 1 0
chr7:43639449|43640649 HNRNPA1 1 8 0
chr7:43639449|43640649 DDX3X 0 2 3
chr7:43639449|43640649 ZC3H7B 0 2 0
chr7:43639449|43640649 LARP7 0 0 1
chr7:43639449|43640649 SMNDC1 2 0 3
chr7:43639449|43640649 MSI2 0 2 0
chr7:43639449|43640649 MSI1 0 1 0
chr7:43639449|43640649 ACIN1 0 7 3
chr7:43639449|43640649 LIN28B 1 5 0
chr7:43639449|43640649 LIN28A 0 0 1
chr7:43639449|43640649 FXR2 0 1 1
chr7:43639449|43640649 RBFOX2 0 1 0
chr7:43639449|43640649 SND1 0 0 1
chr7:43639449|43640649 IGF2BP1 1 6 11
chr7:43639449|43640649 GTF2F1 0 1 0
chr7:43639449|43640649 IGF2BP3 0 4 7
chr7:43639449|43640649 IGF2BP2 4 8 16
chr7:43639449|43640649 FTO 0 1 0
chr7:43639449|43640649 TARDBP 0 4 2
chr7:43639449|43640649 BUD13 1 1 5
chr7:43639449|43640649 KHSRP 0 3 0
chr7:43639449|43640649 CNBP 1 0 0
chr7:43639449|43640649 RTCB 0 1 1
chr7:43639449|43640649 EIF4G1 0 1 0
chr7:43639449|43640649 CSTF2T 0 4 2
chr7:43639449|43640649 CSTF2 5 7 0
chr7:43639449|43640649 LARP4B 0 1 4
chr7:43639449|43640649 AGO3 0 1 0
chr7:43639449|43640649 XRN2 0 1 0
chr7:43639449|43640649 EIF4G2 0 0 1
chr7:43639449|43640649 HNRNPK 1 0 0
chr7:43639449|43640649 AGO2 0 5 2
chr7:43639449|43640649 AGO1 0 1 0
chr7:43639449|43640649 EWSR1 0 1 0
chr7:43639449|43640649 EIF4A3 4 6 4
chr7:43639449|43640649 FBL 2 2 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab