CircRNA Information

General Information
circRNA Basic Information
CircID chr7:44106689|44106887
Strand +
CircType exon
Host Gene ENSG00000106624.7;
Algorism CIRI2;
Sequence CTCCCTCCTGGGGTAGCTCCTCGGGGCCAGGGCTGGGGGGTGGGGGCAGTGGCCACTCCAGGGTTTCTGAGGGAGCCAGAATGGGGGGCCTCTTCCCTGACGGGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCTTTGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCCTTGGGCTTCTTGGTGGCCTTAGGTGGCTTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:44106689|44106887 hsa-miR-122-5p 0 0 1
chr7:44106689|44106887 hsa-miR-122-3p 0 0 1
chr7:44106689|44106887 hsa-miR-149-5p 0 0 1
chr7:44106689|44106887 hsa-miR-149-3p 0 0 1
chr7:44106689|44106887 hsa-miR-588 0 0 1
chr7:44106689|44106887 hsa-miR-708-5p 0 0 1
chr7:44106689|44106887 hsa-miR-708-3p 0 0 1
chr7:44106689|44106887 hsa-miR-665 0 0 1
chr7:44106689|44106887 hsa-miR-361-3p 0 1 1
chr7:44106689|44106887 hsa-miR-28-5p 0 0 1
chr7:44106689|44106887 hsa-miR-324-3p 0 1 1
chr7:44106689|44106887 hsa-miR-151-5p 0 0 1
chr7:44106689|44106887 hsa-miR-151b 0 1 0
chr7:44106689|44106887 hsa-miR-663b 1 0 0
chr7:44106689|44106887 hsa-miR-1913 1 1 0
chr7:44106689|44106887 hsa-miR-4308 0 1 0
chr7:44106689|44106887 hsa-miR-4254 0 1 0
chr7:44106689|44106887 hsa-miR-3918 0 1 0
chr7:44106689|44106887 hsa-miR-3943 0 1 0
chr7:44106689|44106887 hsa-miR-4469 0 1 0
chr7:44106689|44106887 hsa-miR-4523 0 1 0
chr7:44106689|44106887 hsa-miR-9500 0 1 0
chr7:44106689|44106887 hsa-miR-12128 0 1 0
chr7:44106689|44106887 hsa-miR-671-5p 0 1 0
chr7:44106689|44106887 hsa-miR-6720-5p 1 0 0
chr7:44106689|44106887 hsa-miR-3677-5p 0 1 0
chr7:44106689|44106887 hsa-miR-4753-5p 0 1 0
chr7:44106689|44106887 hsa-miR-874-3p 1 1 0
chr7:44106689|44106887 hsa-miR-432-5p 0 1 0
chr7:44106689|44106887 hsa-miR-532-3p 0 1 0
chr7:44106689|44106887 hsa-miR-939-3p 1 0 0
chr7:44106689|44106887 hsa-miR-4786-3p 0 1 0
chr7:44106689|44106887 hsa-miR-1908-3p 1 0 0
chr7:44106689|44106887 hsa-miR-4640-3p 1 1 0
chr7:44106689|44106887 hsa-miR-339-5p 0 1 0
chr7:44106689|44106887 hsa-miR-3922-5p 1 1 0
chr7:44106689|44106887 hsa-miR-7106-3p 0 1 0
chr7:44106689|44106887 hsa-miR-6813-3p 1 0 0
chr7:44106689|44106887 hsa-miR-6814-5p 0 1 0
chr7:44106689|44106887 hsa-miR-4529-5p 0 1 0
chr7:44106689|44106887 hsa-miR-6760-3p 0 1 0
chr7:44106689|44106887 hsa-miR-4433a-5p 1 0 0
chr7:44106689|44106887 hsa-miR-4717-5p 1 1 0
chr7:44106689|44106887 hsa-miR-6779-3p 0 1 0
chr7:44106689|44106887 hsa-miR-6732-3p 0 1 0
chr7:44106689|44106887 hsa-miR-6890-3p 0 1 0
chr7:44106689|44106887 hsa-miR-1343-5p 1 1 0
chr7:44106689|44106887 hsa-miR-4633-3p 0 1 0
chr7:44106689|44106887 hsa-miR-6784-3p 0 1 0
chr7:44106689|44106887 hsa-miR-6862-3p 0 1 0
chr7:44106689|44106887 hsa-miR-3928-5p 0 1 0
chr7:44106689|44106887 hsa-miR-6837-5p 0 1 0
chr7:44106689|44106887 hsa-miR-6775-3p 1 0 0
chr7:44106689|44106887 hsa-miR-4701-5p 1 1 0
chr7:44106689|44106887 hsa-miR-6500-5p 0 1 0
chr7:44106689|44106887 hsa-miR-151a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:44106689|44106887
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MREPEWGASSLTGASWWPWVASLWASWWPWVASPWASWWP
Nucleotide Sequence CTGAGGGAGCCAGAATGGGGGGCCTCTTCCCTGACGGGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCTTTGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCCTTGGGCTTCTTGGTGGCCTTAG
CircID chr7:44106689|44106887
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MGGGGSGHSRVSEGARMGGLFPDGGFLVALGGFSLGFLVALGGFSLGFLVALGGF
Nucleotide Sequence CTGGGGGGTGGGGGCAGTGGCCACTCCAGGGTTTCTGAGGGAGCCAGAATGGGGGGCCTCTTCCCTGACGGGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCTTTGGGCTTCTTGGTGGCCTTGGGTGGCTTCTCCTTGGGCTTCTTGGTGGCCTTAGGTGGCTTC
CircID chr7:44106689|44106887
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MAPSETLEWPLPPPPSPGPEELPQEG
Nucleotide Sequence CTGGCTCCCTCAGAAACCCTGGAGTGGCCACTGCCCCCACCCCCCAGCCCTGGCCCCGAGGAGCTACCCCAGGAGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab