CircRNA Information

General Information
circRNA Basic Information
CircID chr7:44110743|44111004
Strand -
CircType exon
Host Gene ENSG00000106624.7;
Algorism CIRI2;
Sequence CTTCTTCGTGGGCTTCAGCAATGACAGCCAGACATGGGTGATGTACACCAACGGCTATGAGGAAATGGTGGGCACCATGCCCAGGCTCTTGGCTCTGCTCCCATTGTCTGGGCGAGGGGTGGGCTCTCAGAGGGGCTGGCAGTACTGCTCTGAGGCCTGCCTCTCCCCAGACCTTTCATGGGAACGTGGACAAGGACACACCCGTGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATCCGCATCTACCCACTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:44110743|44111004 hsa-miR-149-5p 0 0 1
chr7:44110743|44111004 hsa-miR-149-3p 0 0 1
chr7:44110743|44111004 hsa-miR-326 0 1 1
chr7:44110743|44111004 hsa-miR-335-5p 0 0 1
chr7:44110743|44111004 hsa-miR-335-3p 0 0 1
chr7:44110743|44111004 hsa-miR-488-5p 0 0 1
chr7:44110743|44111004 hsa-miR-488-3p 0 0 1
chr7:44110743|44111004 hsa-miR-612 0 1 1
chr7:44110743|44111004 hsa-miR-616-5p 0 0 1
chr7:44110743|44111004 hsa-miR-616-3p 0 0 1
chr7:44110743|44111004 hsa-miR-637 1 0 1
chr7:44110743|44111004 hsa-miR-661 0 1 1
chr7:44110743|44111004 hsa-miR-760 0 1 1
chr7:44110743|44111004 hsa-miR-920 0 0 1
chr7:44110743|44111004 hsa-miR-939-5p 0 0 1
chr7:44110743|44111004 hsa-miR-939-3p 0 0 1
chr7:44110743|44111004 hsa-miR-940 0 0 1
chr7:44110743|44111004 hsa-miR-1231 0 0 1
chr7:44110743|44111004 hsa-miR-1238-5p 0 0 1
chr7:44110743|44111004 hsa-miR-1238-3p 0 0 1
chr7:44110743|44111004 hsa-miR-1202 0 1 1
chr7:44110743|44111004 hsa-miR-1278 0 0 1
chr7:44110743|44111004 hsa-miR-1827 0 0 1
chr7:44110743|44111004 hsa-miR-512-5p 0 0 1
chr7:44110743|44111004 hsa-miR-654-3p 0 0 1
chr7:44110743|44111004 hsa-miR-628-5p 0 0 1
chr7:44110743|44111004 hsa-miR-330-5p 0 0 1
chr7:44110743|44111004 hsa-miR-220b 0 0 1
chr7:44110743|44111004 hsa-miR-1285 0 0 1
chr7:44110743|44111004 hsa-miR-499-3p 0 0 1
chr7:44110743|44111004 hsa-miR-557 1 0 0
chr7:44110743|44111004 hsa-miR-1182 0 1 0
chr7:44110743|44111004 hsa-miR-2278 0 1 0
chr7:44110743|44111004 hsa-miR-3132 0 1 0
chr7:44110743|44111004 hsa-miR-3921 0 1 0
chr7:44110743|44111004 hsa-miR-4464 0 1 0
chr7:44110743|44111004 hsa-miR-4466 1 0 0
chr7:44110743|44111004 hsa-miR-4481 0 1 0
chr7:44110743|44111004 hsa-miR-4506 1 0 0
chr7:44110743|44111004 hsa-miR-3972 0 1 0
chr7:44110743|44111004 hsa-miR-4651 1 0 0
chr7:44110743|44111004 hsa-miR-4688 1 0 0
chr7:44110743|44111004 hsa-miR-4748 0 1 0
chr7:44110743|44111004 hsa-miR-5093 1 0 0
chr7:44110743|44111004 hsa-miR-6081 1 1 0
chr7:44110743|44111004 hsa-miR-6090 1 0 0
chr7:44110743|44111004 hsa-miR-8085 0 1 0
chr7:44110743|44111004 hsa-miR-8089 0 1 0
chr7:44110743|44111004 hsa-miR-215-3p 0 1 0
chr7:44110743|44111004 hsa-miR-6861-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6825-5p 1 0 0
chr7:44110743|44111004 hsa-miR-3192-5p 0 1 0
chr7:44110743|44111004 hsa-miR-3064-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6730-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6727-5p 1 0 0
chr7:44110743|44111004 hsa-miR-197-5p 1 1 0
chr7:44110743|44111004 hsa-miR-6748-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6827-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6798-5p 1 0 0
chr7:44110743|44111004 hsa-miR-3194-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6850-5p 1 0 0
chr7:44110743|44111004 hsa-miR-1226-5p 1 0 0
chr7:44110743|44111004 hsa-miR-1229-5p 1 1 0
chr7:44110743|44111004 hsa-miR-6769a-3p 0 1 0
chr7:44110743|44111004 hsa-miR-103b 0 1 0
chr7:44110743|44111004 hsa-miR-1180-3p 1 0 0
chr7:44110743|44111004 hsa-miR-6501-3p 0 1 0
chr7:44110743|44111004 hsa-miR-3670 1 1 0
chr7:44110743|44111004 hsa-miR-3177-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6780b-3p 0 1 0
chr7:44110743|44111004 hsa-miR-1233-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6769b-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6893-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6756-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6769a-5p 1 0 0
chr7:44110743|44111004 hsa-miR-7110-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6763-5p 0 1 0
chr7:44110743|44111004 hsa-miR-6779-5p 1 0 0
chr7:44110743|44111004 hsa-miR-1909-3p 1 0 0
chr7:44110743|44111004 hsa-miR-328-5p 1 0 0
chr7:44110743|44111004 hsa-miR-4726-5p 1 0 0
chr7:44110743|44111004 hsa-miR-4745-5p 1 0 0
chr7:44110743|44111004 hsa-miR-6848-5p 1 0 0
chr7:44110743|44111004 hsa-miR-3187-5p 0 1 0
chr7:44110743|44111004 hsa-miR-4723-5p 1 0 0
chr7:44110743|44111004 hsa-miR-4758-5p 1 1 0
chr7:44110743|44111004 hsa-miR-6731-5p 0 1 0
chr7:44110743|44111004 hsa-miR-7843-5p 1 0 0
chr7:44110743|44111004 hsa-miR-4700-5p 0 1 0
chr7:44110743|44111004 hsa-miR-4667-5p 0 1 0
chr7:44110743|44111004 hsa-miR-5591-5p 1 1 0
chr7:44110743|44111004 hsa-miR-3085-3p 0 1 0
chr7:44110743|44111004 hsa-miR-499a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:44110743|44111004
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence MYTNGYEEMVGTMPRLLALLPLSGRGVGSQRGWQYCSEACLSPDLSWERGQGHTRAE
Nucleotide Sequence ATGTACACCAACGGCTATGAGGAAATGGTGGGCACCATGCCCAGGCTCTTGGCTCTGCTCCCATTGTCTGGGCGAGGGGTGGGCTCTCAGAGGGGCTGGCAGTACTGCTCTGAGGCCTGCCTCTCCCCAGACCTTTCATGGGAACGTGGACAAGGACACACCCGTGCTGAGTGA
CircID chr7:44110743|44111004
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MRKWWAPCPGSWLCSHCLGEGWALRGAGSTALRPASPQTFHGNVDKDTPVLSELPEPVVARFIRIYPL
Nucleotide Sequence ATGAGGAAATGGTGGGCACCATGCCCAGGCTCTTGGCTCTGCTCCCATTGTCTGGGCGAGGGGTGGGCTCTCAGAGGGGCTGGCAGTACTGCTCTGAGGCCTGCCTCTCCCCAGACCTTTCATGGGAACGTGGACAAGGACACACCCGTGCTGAGTGAGCTCCCAGAGCCGGTGGTGGCTCGTTTCATCCGCATCTACCCACTC
CircID chr7:44110743|44111004
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MPAPLRAHPSPRQWEQSQEPGHGAHHFLIAVGVHHPCLAVIAEAHEE
Nucleotide Sequence CTGCCAGCCCCTCTGAGAGCCCACCCCTCGCCCAGACAATGGGAGCAGAGCCAAGAGCCTGGGCATGGTGCCCACCATTTCCTCATAGCCGTTGGTGTACATCACCCATGTCTGGCTGTCATTGCTGAAGCCCACGAAGAA
CircID chr7:44110743|44111004
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MGAHSARVCPCPRSHERSGERQASEQYCQPL
Nucleotide Sequence CTGGGAGCTCACTCAGCACGGGTGTGTCCTTGTCCACGTTCCCATGAAAGGTCTGGGGAGAGGCAGGCCTCAGAGCAGTACTGCCAGCCCCTCTGA
CircID chr7:44110743|44111004
ORF Type ORF5
Protein Length 54
Nucleotide Length 165
Protein Sequence MKGLGRGRPQSSTASPSESPPLAQTMGAEPRAWAWCPPFPHSRWCTSPMSGCHC
Nucleotide Sequence ATGAAAGGTCTGGGGAGAGGCAGGCCTCAGAGCAGTACTGCCAGCCCCTCTGAGAGCCCACCCCTCGCCCAGACAATGGGAGCAGAGCCAAGAGCCTGGGCATGGTGCCCACCATTTCCTCATAGCCGTTGGTGTACATCACCCATGTCTGGCTGTCATTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab