CircRNA Information

General Information
circRNA Basic Information
CircID chr7:44759707|44759905
Strand +
CircType exon
Host Gene ENSG00000122515.13;
Algorism CIRI2;
Sequence CCGGCGCACCCAGGCTCCCAGGGAGGTAGGCTCTGCCCATGCACCCAGAAAGGGTACATGGCCAGCAGCGAGGGCCTGTCCTCTCAATGGATTTCTCTGCAGCAAGTAGAAGGAATGACACTTTTCCATAAAGAACATTCAAATGTTTTGGGTACCCACCTGCTGCTCCCTGCACAGGATACCCCTGAGATATATGAAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:44759707|44759905 hsa-miR-15a-5p 0 0 1
chr7:44759707|44759905 hsa-miR-15a-3p 0 0 1
chr7:44759707|44759905 hsa-miR-214-5p 0 0 1
chr7:44759707|44759905 hsa-miR-214-3p 0 0 1
chr7:44759707|44759905 hsa-miR-15b-5p 0 0 1
chr7:44759707|44759905 hsa-miR-15b-3p 0 0 1
chr7:44759707|44759905 hsa-miR-195-5p 0 0 1
chr7:44759707|44759905 hsa-miR-195-3p 0 0 1
chr7:44759707|44759905 hsa-miR-424-5p 0 0 1
chr7:44759707|44759905 hsa-miR-424-3p 0 0 1
chr7:44759707|44759905 hsa-miR-497-5p 0 0 1
chr7:44759707|44759905 hsa-miR-497-3p 0 0 1
chr7:44759707|44759905 hsa-miR-539-5p 0 0 1
chr7:44759707|44759905 hsa-miR-539-3p 0 0 1
chr7:44759707|44759905 hsa-miR-616-5p 0 0 1
chr7:44759707|44759905 hsa-miR-616-3p 0 0 1
chr7:44759707|44759905 hsa-miR-639 0 1 1
chr7:44759707|44759905 hsa-miR-661 0 1 1
chr7:44759707|44759905 hsa-miR-920 0 0 1
chr7:44759707|44759905 hsa-miR-1237-5p 0 0 1
chr7:44759707|44759905 hsa-miR-1237-3p 0 0 1
chr7:44759707|44759905 hsa-miR-1248 0 0 1
chr7:44759707|44759905 hsa-miR-1266-5p 0 0 1
chr7:44759707|44759905 hsa-miR-1266-3p 0 0 1
chr7:44759707|44759905 hsa-miR-1225-5p 0 0 1
chr7:44759707|44759905 hsa-miR-16 0 0 1
chr7:44759707|44759905 hsa-miR-720 0 0 1
chr7:44759707|44759905 hsa-miR-630 0 1 0
chr7:44759707|44759905 hsa-miR-761 0 1 0
chr7:44759707|44759905 hsa-miR-3125 0 1 0
chr7:44759707|44759905 hsa-miR-4270 0 1 0
chr7:44759707|44759905 hsa-miR-4518 0 1 0
chr7:44759707|44759905 hsa-miR-8073 1 0 0
chr7:44759707|44759905 hsa-miR-3692-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6741-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6776-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6868-3p 0 1 0
chr7:44759707|44759905 hsa-miR-6805-5p 0 1 0
chr7:44759707|44759905 hsa-miR-7113-3p 0 1 0
chr7:44759707|44759905 hsa-miR-3162-5p 1 1 0
chr7:44759707|44759905 hsa-miR-3158-5p 1 1 0
chr7:44759707|44759905 hsa-miR-5004-5p 0 1 0
chr7:44759707|44759905 hsa-miR-4524b-3p 0 1 0
chr7:44759707|44759905 hsa-miR-1343-5p 1 0 0
chr7:44759707|44759905 hsa-miR-6726-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6754-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6769a-5p 0 1 0
chr7:44759707|44759905 hsa-miR-6722-3p 1 0 0
chr7:44759707|44759905 hsa-miR-7843-5p 1 1 0
chr7:44759707|44759905 hsa-miR-6791-5p 1 1 0
chr7:44759707|44759905 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:44759707|44759905
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MASSEGLSSQWISLQQVEGMTLFHKEHSNVLGTHLLLPAQDTPEIYE
Nucleotide Sequence ATGGCCAGCAGCGAGGGCCTGTCCTCTCAATGGATTTCTCTGCAGCAAGTAGAAGGAATGACACTTTTCCATAAAGAACATTCAAATGTTTTGGGTACCCACCTGCTGCTCCCTGCACAGGATACCCCTGAGATATATGAA
CircID chr7:44759707|44759905
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPMHPERVHGQQRGPVLSMDFSAASRRNDTFP
Nucleotide Sequence CTGCCCATGCACCCAGAAAGGGTACATGGCCAGCAGCGAGGGCCTGTCCTCTCAATGGATTTCTCTGCAGCAAGTAGAAGGAATGACACTTTTCCATAA
CircID chr7:44759707|44759905
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MNVLYGKVSFLLLAAEKSIERTGPRCWPCTLSGCMGRAYLPGSLGAP
Nucleotide Sequence TTGAATGTTCTTTATGGAAAAGTGTCATTCCTTCTACTTGCTGCAGAGAAATCCATTGAGAGGACAGGCCCTCGCTGCTGGCCATGTACCCTTTCTGGGTGCATGGGCAGAGCCTACCTCCCTGGGAGCCTGGGTGCGCCG
CircID chr7:44759707|44759905
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MFFMEKCHSFYLLQRNPLRGQALAAGHVPFLGAWAEPTSLGAWVRR
Nucleotide Sequence ATGTTCTTTATGGAAAAGTGTCATTCCTTCTACTTGCTGCAGAGAAATCCATTGAGAGGACAGGCCCTCGCTGCTGGCCATGTACCCTTTCTGGGTGCATGGGCAGAGCCTACCTCCCTGGGAGCCTGGGTGCGCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab