CircRNA Information

General Information
circRNA Basic Information
CircID chr7:45104186|45104572
Strand +
CircType exon
Host Gene ENSG00000136270.12;
Algorism CIRI2;
Sequence GAAAGATGTGCTCTTGGACGTGGCCTATGCCTATGGTGAGCCCTTTGGACAGAACGGTGGAGAGAGGGGAGCGCTGGCCCTGCAGATGCCTGCAGCCGTGTCAAATTCAGTACCTGTCCTATGCATGGTAGGCACTGGCCCAGAAGGCTGCCACAGAAACACTGTGACTCATGGGCCCTGTTCCTGTGTCCCAGGCTCAGGGATAAATTTGGTTACAGACATCAAATATCTAGACCTCGAGGCTGAGGTGGGGTGGAGCTGCTGGGTGATTGCTGACTCTCTCCAGCTAAACCCTGTGATCTGCTCTGTCCTGAAGGCAAACTCAGCTTTCACCAGACCCAGGTGTCCCAGCGCCTGGCCACCGACCTGCTATCCCTCATGCCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:45104186|45104572 hsa-miR-27a-5p 0 0 1
chr7:45104186|45104572 hsa-miR-27a-3p 0 0 1
chr7:45104186|45104572 hsa-miR-27b-5p 0 0 1
chr7:45104186|45104572 hsa-miR-27b-3p 0 0 1
chr7:45104186|45104572 hsa-miR-185-5p 0 0 1
chr7:45104186|45104572 hsa-miR-185-3p 0 0 1
chr7:45104186|45104572 hsa-miR-320a-5p 0 0 1
chr7:45104186|45104572 hsa-miR-320a-3p 0 0 1
chr7:45104186|45104572 hsa-miR-335-5p 0 0 1
chr7:45104186|45104572 hsa-miR-335-3p 0 0 1
chr7:45104186|45104572 hsa-miR-519e-5p 0 0 1
chr7:45104186|45104572 hsa-miR-519e-3p 0 0 1
chr7:45104186|45104572 hsa-miR-545-5p 0 0 1
chr7:45104186|45104572 hsa-miR-545-3p 0 0 1
chr7:45104186|45104572 hsa-miR-601 0 0 1
chr7:45104186|45104572 hsa-miR-612 1 0 1
chr7:45104186|45104572 hsa-miR-629-5p 0 0 1
chr7:45104186|45104572 hsa-miR-629-3p 0 0 1
chr7:45104186|45104572 hsa-miR-646 0 0 1
chr7:45104186|45104572 hsa-miR-661 0 1 1
chr7:45104186|45104572 hsa-miR-873-5p 0 0 1
chr7:45104186|45104572 hsa-miR-873-3p 0 0 1
chr7:45104186|45104572 hsa-miR-1237-5p 0 0 1
chr7:45104186|45104572 hsa-miR-1237-3p 0 0 1
chr7:45104186|45104572 hsa-miR-1205 0 1 1
chr7:45104186|45104572 hsa-miR-1197 0 0 1
chr7:45104186|45104572 hsa-miR-1825 1 1 1
chr7:45104186|45104572 hsa-miR-885-3p 0 0 1
chr7:45104186|45104572 hsa-miR-193a-5p 0 0 1
chr7:45104186|45104572 hsa-miR-1184 0 0 1
chr7:45104186|45104572 hsa-miR-1224-3p 0 1 1
chr7:45104186|45104572 hsa-miR-188-5p 0 0 1
chr7:45104186|45104572 hsa-miR-654-3p 0 0 1
chr7:45104186|45104572 hsa-miR-513a-5p 0 0 1
chr7:45104186|45104572 hsa-miR-320b 0 0 1
chr7:45104186|45104572 hsa-miR-320c 0 0 1
chr7:45104186|45104572 hsa-miR-125a-5p 0 0 1
chr7:45104186|45104572 hsa-miR-515-3p 0 0 1
chr7:45104186|45104572 hsa-miR-1302 0 0 1
chr7:45104186|45104572 hsa-miR-320d 0 0 1
chr7:45104186|45104572 hsa-miR-128 0 0 1
chr7:45104186|45104572 hsa-miR-125b 0 0 1
chr7:45104186|45104572 hsa-miR-220c 0 0 1
chr7:45104186|45104572 hsa-miR-153 0 0 1
chr7:45104186|45104572 hsa-miR-1285 0 0 1
chr7:45104186|45104572 hsa-miR-514 0 0 1
chr7:45104186|45104572 hsa-miR-184 1 0 0
chr7:45104186|45104572 hsa-miR-638 1 1 0
chr7:45104186|45104572 hsa-miR-1268a 1 0 0
chr7:45104186|45104572 hsa-miR-4298 1 1 0
chr7:45104186|45104572 hsa-miR-4253 1 0 0
chr7:45104186|45104572 hsa-miR-3621 1 0 0
chr7:45104186|45104572 hsa-miR-3665 1 0 0
chr7:45104186|45104572 hsa-miR-3918 0 1 0
chr7:45104186|45104572 hsa-miR-3945 1 0 0
chr7:45104186|45104572 hsa-miR-1268b 1 0 0
chr7:45104186|45104572 hsa-miR-4436a 1 1 0
chr7:45104186|45104572 hsa-miR-4437 0 1 0
chr7:45104186|45104572 hsa-miR-3135b 0 1 0
chr7:45104186|45104572 hsa-miR-4462 0 1 0
chr7:45104186|45104572 hsa-miR-4486 1 0 0
chr7:45104186|45104572 hsa-miR-4498 1 0 0
chr7:45104186|45104572 hsa-miR-4641 0 1 0
chr7:45104186|45104572 hsa-miR-4644 0 1 0
chr7:45104186|45104572 hsa-miR-4688 1 0 0
chr7:45104186|45104572 hsa-miR-4705 0 1 0
chr7:45104186|45104572 hsa-miR-4710 1 0 0
chr7:45104186|45104572 hsa-miR-4734 1 0 0
chr7:45104186|45104572 hsa-miR-4767 1 0 0
chr7:45104186|45104572 hsa-miR-5702 0 1 0
chr7:45104186|45104572 hsa-miR-6076 1 0 0
chr7:45104186|45104572 hsa-miR-6127 1 0 0
chr7:45104186|45104572 hsa-miR-6132 0 1 0
chr7:45104186|45104572 hsa-miR-6860 1 1 0
chr7:45104186|45104572 hsa-miR-12119 1 0 0
chr7:45104186|45104572 hsa-miR-512-5p 1 1 0
chr7:45104186|45104572 hsa-miR-6861-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6892-3p 1 1 0
chr7:45104186|45104572 hsa-miR-6728-5p 1 0 0
chr7:45104186|45104572 hsa-miR-5187-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6089 1 0 0
chr7:45104186|45104572 hsa-miR-6757-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4722-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4755-3p 0 1 0
chr7:45104186|45104572 hsa-miR-3622b-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6806-5p 1 1 0
chr7:45104186|45104572 hsa-miR-3187-3p 1 0 0
chr7:45104186|45104572 hsa-miR-6873-3p 0 1 0
chr7:45104186|45104572 hsa-miR-7110-3p 0 1 0
chr7:45104186|45104572 hsa-miR-7845-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6768-5p 1 1 0
chr7:45104186|45104572 hsa-miR-3194-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6735-3p 1 0 0
chr7:45104186|45104572 hsa-miR-5088-5p 0 1 0
chr7:45104186|45104572 hsa-miR-1226-5p 1 0 0
chr7:45104186|45104572 hsa-miR-1229-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4640-5p 0 1 0
chr7:45104186|45104572 hsa-miR-1228-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4690-5p 1 0 0
chr7:45104186|45104572 hsa-miR-3614-5p 0 1 0
chr7:45104186|45104572 hsa-miR-6823-5p 0 1 0
chr7:45104186|45104572 hsa-miR-4783-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6834-5p 1 0 0
chr7:45104186|45104572 hsa-miR-149-3p 1 0 0
chr7:45104186|45104572 hsa-miR-6736-3p 0 1 0
chr7:45104186|45104572 hsa-miR-937-5p 0 1 0
chr7:45104186|45104572 hsa-miR-1307-3p 1 0 0
chr7:45104186|45104572 hsa-miR-744-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6741-3p 1 0 0
chr7:45104186|45104572 hsa-miR-3614-3p 0 1 0
chr7:45104186|45104572 hsa-miR-1295b-3p 1 1 0
chr7:45104186|45104572 hsa-miR-216a-3p 0 1 0
chr7:45104186|45104572 hsa-miR-1296-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6826-3p 1 1 0
chr7:45104186|45104572 hsa-miR-6886-3p 1 0 0
chr7:45104186|45104572 hsa-miR-937-3p 1 0 0
chr7:45104186|45104572 hsa-miR-5004-5p 1 1 0
chr7:45104186|45104572 hsa-miR-4738-5p 0 1 0
chr7:45104186|45104572 hsa-miR-514a-3p 0 1 0
chr7:45104186|45104572 hsa-miR-4763-3p 1 0 0
chr7:45104186|45104572 hsa-miR-6775-5p 1 0 0
chr7:45104186|45104572 hsa-miR-5001-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6803-5p 1 0 0
chr7:45104186|45104572 hsa-miR-10401-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6722-3p 1 0 0
chr7:45104186|45104572 hsa-miR-6751-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6879-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6754-3p 0 1 0
chr7:45104186|45104572 hsa-miR-5189-5p 1 1 0
chr7:45104186|45104572 hsa-miR-6836-5p 1 1 0
chr7:45104186|45104572 hsa-miR-6862-5p 1 1 0
chr7:45104186|45104572 hsa-miR-1909-3p 1 0 0
chr7:45104186|45104572 hsa-miR-4632-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4726-5p 0 1 0
chr7:45104186|45104572 hsa-miR-6735-5p 1 0 0
chr7:45104186|45104572 hsa-miR-3187-5p 1 0 0
chr7:45104186|45104572 hsa-miR-1266-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6511b-5p 1 1 0
chr7:45104186|45104572 hsa-miR-1199-5p 0 1 0
chr7:45104186|45104572 hsa-miR-1271-3p 1 1 0
chr7:45104186|45104572 hsa-miR-5008-3p 1 0 0
chr7:45104186|45104572 hsa-miR-6773-5p 0 1 0
chr7:45104186|45104572 hsa-miR-1914-3p 1 0 0
chr7:45104186|45104572 hsa-miR-4700-5p 1 0 0
chr7:45104186|45104572 hsa-miR-10398-5p 0 1 0
chr7:45104186|45104572 hsa-miR-6791-5p 0 1 0
chr7:45104186|45104572 hsa-miR-6762-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6784-3p 0 1 0
chr7:45104186|45104572 hsa-miR-6862-3p 0 1 0
chr7:45104186|45104572 hsa-miR-330-5p 0 1 0
chr7:45104186|45104572 hsa-miR-10394-5p 0 1 0
chr7:45104186|45104572 hsa-miR-33b-3p 0 1 0
chr7:45104186|45104572 hsa-miR-370-5p 1 0 0
chr7:45104186|45104572 hsa-miR-6811-5p 0 1 0
chr7:45104186|45104572 hsa-miR-4659a-5p 1 0 0
chr7:45104186|45104572 hsa-miR-4659b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:45104186|45104572
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MHGRHWPRRLPQKHCDSWALFLCPRLRDKFGYRHQISRPRG
Nucleotide Sequence ATGCATGGTAGGCACTGGCCCAGAAGGCTGCCACAGAAACACTGTGACTCATGGGCCCTGTTCCTGTGTCCCAGGCTCAGGGATAAATTTGGTTACAGACATCAAATATCTAGACCTCGAGGCTGA
CircID chr7:45104186|45104572
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MLCPEGKLSFHQTQVSQRLATDLLSLMPS
Nucleotide Sequence CTGCTCTGTCCTGAAGGCAAACTCAGCTTTCACCAGACCCAGGTGTCCCAGCGCCTGGCCACCGACCTGCTATCCCTCATGCCCAGC
CircID chr7:45104186|45104572
ORF Type ORF3
Protein Length 124
Nucleotide Length 372
Protein Sequence MDVAYAYGEPFGQNGGERGALALQMPAAVSNSVPVLCMVGTGPEGCHRNTVTHGPCSCVPGSGINLVTDIKYLDLEAEVGWSCWVIADSLQLNPVICSVLKANSAFTRPRCPSAWPPTCYPSCP
Nucleotide Sequence TTGGACGTGGCCTATGCCTATGGTGAGCCCTTTGGACAGAACGGTGGAGAGAGGGGAGCGCTGGCCCTGCAGATGCCTGCAGCCGTGTCAAATTCAGTACCTGTCCTATGCATGGTAGGCACTGGCCCAGAAGGCTGCCACAGAAACACTGTGACTCATGGGCCCTGTTCCTGTGTCCCAGGCTCAGGGATAAATTTGGTTACAGACATCAAATATCTAGACCTCGAGGCTGAGGTGGGGTGGAGCTGCTGGGTGATTGCTGACTCTCTCCAGCTAAACCCTGTGATCTGCTCTGTCCTGAAGGCAAACTCAGCTTTCACCAGACCCAGGTGTCCCAGCGCCTGGCCACCGACCTGCTATCCCTCATGCCCA
CircID chr7:45104186|45104572
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MCSWTWPMPMVSPLDRTVERGERWPCRCLQPCQIQYLSYAW
Nucleotide Sequence ATGTGCTCTTGGACGTGGCCTATGCCTATGGTGAGCCCTTTGGACAGAACGGTGGAGAGAGGGGAGCGCTGGCCCTGCAGATGCCTGCAGCCGTGTCAAATTCAGTACCTGTCCTATGCATGGTAG
CircID chr7:45104186|45104572
ORF Type ORF5
Protein Length 60
Nucleotide Length 183
Protein Sequence MGHLGLVKAEFAFRTEQITGFSWRESAITQQLHPTSASRSRYLMSVTKFIPEPGTQEQGP
Nucleotide Sequence CTGGGACACCTGGGTCTGGTGAAAGCTGAGTTTGCCTTCAGGACAGAGCAGATCACAGGGTTTAGCTGGAGAGAGTCAGCAATCACCCAGCAGCTCCACCCCACCTCAGCCTCGAGGTCTAGATATTTGATGTCTGTAACCAAATTTATCCCTGAGCCTGGGACACAGGAACAGGGCCCATGA
CircID chr7:45104186|45104572
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MWQPSGPVPTMHRTGTEFDTAAGICRASAPLSPPFCPKGSP
Nucleotide Sequence CTGTGGCAGCCTTCTGGGCCAGTGCCTACCATGCATAGGACAGGTACTGAATTTGACACGGCTGCAGGCATCTGCAGGGCCAGCGCTCCCCTCTCTCCACCGTTCTGTCCAAAGGGCTCACCATAG
CircID chr7:45104186|45104572
ORF Type ORF7
Protein Length 34
Nucleotide Length 105
Protein Sequence MSLPSGQSRSQGLAGESQQSPSSSTPPQPRGLDI
Nucleotide Sequence CTGAGTTTGCCTTCAGGACAGAGCAGATCACAGGGTTTAGCTGGAGAGAGTCAGCAATCACCCAGCAGCTCCACCCCACCTCAGCCTCGAGGTCTAGATATTTGA
CircID chr7:45104186|45104572
ORF Type ORF8
Protein Length 66
Nucleotide Length 198
Protein Sequence MSLGHRNRAHESQCFCGSLLGQCLPCIGQVLNLTRLQASAGPALPSLHRSVQRAHHRHRPRPRAHL
Nucleotide Sequence CTGAGCCTGGGACACAGGAACAGGGCCCATGAGTCACAGTGTTTCTGTGGCAGCCTTCTGGGCCAGTGCCTACCATGCATAGGACAGGTACTGAATTTGACACGGCTGCAGGCATCTGCAGGGCCAGCGCTCCCCTCTCTCCACCGTTCTGTCCAAAGGGCTCACCATAGGCATAGGCCACGTCCAAGAGCACATCTT
CircID chr7:45104186|45104572
ORF Type ORF9
Protein Length 28
Nucleotide Length 84
Protein Sequence MQGQRSPLSTVLSKGLTIGIGHVQEHIF
Nucleotide Sequence CTGCAGGGCCAGCGCTCCCCTCTCTCCACCGTTCTGTCCAAAGGGCTCACCATAGGCATAGGCCACGTCCAAGAGCACATCTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab