CircRNA Information

General Information
circRNA Basic Information
CircID chr7:47969219|47978816
Strand -
CircType exon
Host Gene ENSG00000136273.11;
Algorism find_circ;CIRI2;DCC;
Sequence GAATCAGTAACATGATAGCCAAGCTTGCCAAAACCTGCACCCTCCGCATCAGCCCTGATAAGCTTAACTTCATCCTTTGTGACAAGCTGGCTAATGGAGGAGTGAGCATGTGGTGTGAGCTGGAACAGGAGAACTTCTTCAACGAATTTCAAATGGAGGGTGTCTCTGCAGAAAACAATGAGATTTATTTAGAGCTAACATCGGAAAACTTATCTCGAGCCTTGAAGACTGCCCAGAATGCCAGGGCTTTGAAAATCAAACTGACTAATAAACACTTTCCCTGCCTCACGGTCTCCGTGGAGCTGGTGAGTAGGAGAGTCAGGGTTTCTAACACAGAAGTCTTGGCCTCGAAGGAATAGACATAGTTAGCCTAGCCTTTTTAACAATAAATACTGTTGAAAGCTGTTTGGTTTATTTAAATTTAAAGATCTGGTCCATAACTATATTTTGCATTAGAGTCAGTTATCTATGTCAAGCAGTAGCCGCATTGTGACCCATGACATCCCCATAAAGGTGATTCCTAGGAAATTGTGGAAGGACTTACAAGAACCGGTGGTCCCAGATCCTGATGACTTGATCTTTTCCTCAGCCGGTCAGGAGCGATATCTGGATGTGCACGAAAGCCAAGAAGAGAAGAATTTCATGGCTTAGGGCTAACATGGGGTAACGGTCATGCCGATGGTTAACCCTAGAGCTCCTGAAAGTAAAGATGATGCCAAAGGGCCCATTTCCTCTTGCTCACAATTTGTTTAAGAAGAAAGTACAGAAATATGCTGGGTTAGTATTTATTTACCAGTCTTGAAGACTATGAAGAGTGTTGTGGAAAAAATGAAAAACATCAGCAATCACCTTGTTCCATCCAATTAAAAGAACTGATTGGTTGTTGGGGTGGGTAGAGGAGCTTCAAAGGAAAGGAGTCCCTTGTGACCTGTGGAGACAGTCCCCGGGCAGCAAGAGCAGGAGTAGAAGAGGGGTGCCCGATGGTATATGAGGGGATGGCAGAAGTCTGGTAGCCTGGGCGTGTGGAGTTTGGCTCAGCCATCCTCAGTCCTGGTAACCCAACAGCAGCCCCAGACCCTTCTGGATTTGGACATTTCATTTTCCAACATGTTATTGAAGCAAACCTAGATGGAGAATTGAATTTGAAAATAGAAACTGAATTAGTATGTGTTACAACTCATTTTAAAGATCTTGGAAATCCTCCATTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:47969219|47978816 hsa-miR-596 1 1 1
chr7:47969219|47978816 hsa-miR-661 1 1 1
chr7:47969219|47978816 hsa-miR-765 1 1 1
chr7:47969219|47978816 hsa-miR-298 1 1 1
chr7:47969219|47978816 hsa-miR-3147 1 1 1
chr7:47969219|47978816 hsa-miR-4260 1 1 1
chr7:47969219|47978816 hsa-miR-3650 1 1 1
chr7:47969219|47978816 hsa-miR-4450 1 1 1
chr7:47969219|47978816 hsa-miR-3135b 1 1 1
chr7:47969219|47978816 hsa-miR-4487 1 1 1
chr7:47969219|47978816 hsa-miR-4533 1 1 1
chr7:47969219|47978816 hsa-miR-5093 1 1 1
chr7:47969219|47978816 hsa-miR-5192 1 1 1
chr7:47969219|47978816 hsa-miR-5194 1 1 1
chr7:47969219|47978816 hsa-miR-5572 1 1 1
chr7:47969219|47978816 hsa-miR-6131 1 1 1
chr7:47969219|47978816 hsa-miR-6165 1 1 1
chr7:47969219|47978816 hsa-miR-138-5p 1 1 1
chr7:47969219|47978816 hsa-miR-4433b-3p 1 1 1
chr7:47969219|47978816 hsa-miR-122-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6734-5p 1 1 1
chr7:47969219|47978816 hsa-miR-1247-3p 1 1 1
chr7:47969219|47978816 hsa-miR-6747-5p 1 1 1
chr7:47969219|47978816 hsa-miR-4433a-3p 1 1 1
chr7:47969219|47978816 hsa-miR-6861-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6894-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6510-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6804-5p 1 1 1
chr7:47969219|47978816 hsa-miR-1236-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6515-5p 1 1 1
chr7:47969219|47978816 hsa-miR-7847-3p 1 1 1
chr7:47969219|47978816 hsa-miR-4709-3p 1 1 1
chr7:47969219|47978816 hsa-miR-4722-5p 1 1 1
chr7:47969219|47978816 hsa-miR-3064-5p 1 1 1
chr7:47969219|47978816 hsa-miR-4459 1 1 1
chr7:47969219|47978816 hsa-miR-145-3p 1 1 1
chr7:47969219|47978816 hsa-miR-6721-5p 1 1 1
chr7:47969219|47978816 hsa-miR-197-5p 1 1 1
chr7:47969219|47978816 hsa-miR-8069 1 1 1
chr7:47969219|47978816 hsa-miR-659-3p 1 1 1
chr7:47969219|47978816 hsa-miR-6748-5p 1 1 1
chr7:47969219|47978816 hsa-miR-3190-3p 1 1 1
chr7:47969219|47978816 hsa-miR-6782-5p 1 1 1
chr7:47969219|47978816 hsa-miR-95-5p 1 1 1
chr7:47969219|47978816 hsa-miR-939-3p 1 1 1
chr7:47969219|47978816 hsa-miR-1226-5p 1 1 1
chr7:47969219|47978816 hsa-miR-1229-5p 1 1 1
chr7:47969219|47978816 hsa-miR-885-3p 1 1 1
chr7:47969219|47978816 hsa-miR-1228-5p 1 1 1
chr7:47969219|47978816 hsa-miR-6834-5p 1 1 1
chr7:47969219|47978816 hsa-miR-7112-5p 1 1 1
chr7:47969219|47978816 hsa-miR-4707-5p 1 1 1
chr7:47969219|47978816 hsa-miR-1910-5p 1 1 1
chr7:47969219|47978816 hsa-miR-509-3p 1 1 1
chr7:47969219|47978816 hsa-miR-219a-2-3p 1 1 1
chr7:47969219|47978816 hsa-miR-5587-3p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr7:47969219|47978816
ORF Type ORF1
Protein Length 116
Nucleotide Length 348
Protein Sequence MIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELVSRRVRVSNTEVLASKE*
Nucleotide Sequence ATGATAGCCAAGCTTGCCAAAACCTGCACCCTCCGCATCAGCCCTGATAAGCTTAACTTCATCCTTTGTGACAAGCTGGCTAATGGAGGAGTGAGCATGTGGTGTGAGCTGGAACAGGAGAACTTCTTCAACGAATTTCAAATGGAGGGTGTCTCTGCAGAAAACAATGAGATTTATTTAGAGCTAACATCGGAAAACTTATCTCGAGCCTTGAAGACTGCCCAGAATGCCAGGGCTTTGAAAATCAAACTGACTAATAAACACTTTCCCTGCCTCACGGTCTCCGTGGAGCTGGTGAGTAGGAGAGTCAGGGTTTCTAACACAGAAGTCTTGGCCTCGAAGGAATAG

CircID chr7:47969219|47978816
ORF Type ORF2
Protein Length 87
Nucleotide Length 261
Protein Sequence MKCPNPEGSGAAVGLPGLRMAEPNSTRPGYQTSAIPSYTIGHPSSTPALAARGLSPQVTRDSFPLKLLYPPQQPISSFNWMEQGDC*
Nucleotide Sequence ATGAAATGTCCAAATCCAGAAGGGTCTGGGGCTGCTGTTGGGTTACCAGGACTGAGGATGGCTGAGCCAAACTCCACACGCCCAGGCTACCAGACTTCTGCCATCCCCTCATATACCATCGGGCACCCCTCTTCTACTCCTGCTCTTGCTGCCCGGGGACTGTCTCCACAGGTCACAAGGGACTCCTTTCCTTTGAAGCTCCTCTACCCACCCCAACAACCAATCAGTTCTTTTAATTGGATGGAACAAGGTGATTGCTGA

CircID chr7:47969219|47978816
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDDLIFSSAGQERYLDVHESQEEKNFMA*
Nucleotide Sequence ATGTCAAGCAGTAGCCGCATTGTGACCCATGACATCCCCATAAAGGTGATTCCTAGGAAATTGTGGAAGGACTTACAAGAACCGGTGGTCCCAGATCCTGATGACTTGATCTTTTCCTCAGCCGGTCAGGAGCGATATCTGGATGTGCACGAAAGCCAAGAAGAGAAGAATTTCATGGCTTAG

CircID chr7:47969219|47978816
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MRGWQKSGSLGVWSLAQPSSVLVTQQQPQTLLDLDISFSNMLLKQT*
Nucleotide Sequence ATGAGGGGATGGCAGAAGTCTGGTAGCCTGGGCGTGTGGAGTTTGGCTCAGCCATCCTCAGTCCTGGTAACCCAACAGCAGCCCCAGACCCTTCTGGATTTGGACATTTCATTTTCCAACATGTTATTGAAGCAAACCTAG

CircID chr7:47969219|47978816
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MLTPPLASLSQRMKLSLSGLMRRVQVLASLAIMLLI
Nucleotide Sequence ATGCTCACTCCTCCATTAGCCAGCTTGTCACAAAGGATGAAGTTAAGCTTATCAGGGCTGATGCGGAGGGTGCAGGTTTTGGCAAGCTTGGCTATCATGTTACTGATT

CircID chr7:47969219|47978816
ORF Type ORF6
Protein Length 31
Nucleotide Length 93
Protein Sequence MMPKGPFPLAHNLFKKKVQKYAGLVFIYQS*
Nucleotide Sequence ATGATGCCAAAGGGCCCATTTCCTCTTGCTCACAATTTGTTTAAGAAGAAAGTACAGAAATATGCTGGGTTAGTATTTATTTACCAGTCTTGA

CircID chr7:47969219|47978816
ORF Type ORF7
Protein Length 62
Nucleotide Length 186
Protein Sequence VEFGSAILSPGNPTAAPDPSGFGHFIFQHVIEANLDGELNLKIETELVCVTTHFKDLGNPPL
Nucleotide Sequence GTGGAGTTTGGCTCAGCCATCCTCAGTCCTGGTAACCCAACAGCAGCCCCAGACCCTTCTGGATTTGGACATTTCATTTTCCAACATGTTATTGAAGCAAACCTAGATGGAGAATTGAATTTGAAAATAGAAACTGAATTAGTATGTGTTACAACTCATTTTAAAGATCTTGGAAATCCTCCATTA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:47969219|47978816 GTF2F1 6 0 0
chr7:47969219|47978816 NOP56 1 0 0
chr7:47969219|47978816 MOV10 0 0 1
chr7:47969219|47978816 ELAVL1 3 2 3
chr7:47969219|47978816 NUMA1 1 0 0
chr7:47969219|47978816 SF3B4 3 0 0
chr7:47969219|47978816 FAM120A 2 0 0
chr7:47969219|47978816 PRPF8 6 0 1
chr7:47969219|47978816 YTHDF1 1 0 0
chr7:47969219|47978816 SLBP 0 1 0
chr7:47969219|47978816 UPF1 2 0 0
chr7:47969219|47978816 SRSF10 1 0 0
chr7:47969219|47978816 TAF15 1 0 0
chr7:47969219|47978816 FMR1 1 0 1
chr7:47969219|47978816 FUS 5 1 0
chr7:47969219|47978816 SRSF7 1 0 0
chr7:47969219|47978816 SRSF1 3 1 3
chr7:47969219|47978816 NOP58 2 0 4
chr7:47969219|47978816 SRSF3 1 0 0
chr7:47969219|47978816 U2AF2 6 5 14
chr7:47969219|47978816 SRSF9 2 0 1
chr7:47969219|47978816 HNRNPU 2 0 0
chr7:47969219|47978816 DDX54 0 0 5
chr7:47969219|47978816 RBM10 1 0 0
chr7:47969219|47978816 PCBP2 2 0 0
chr7:47969219|47978816 TRA2A 1 0 2
chr7:47969219|47978816 METTL14 1 0 0
chr7:47969219|47978816 ZNF184 0 1 0
chr7:47969219|47978816 DDX3X 2 0 1
chr7:47969219|47978816 LARP4B 0 0 1
chr7:47969219|47978816 SMNDC1 3 0 0
chr7:47969219|47978816 MSI2 1 0 0
chr7:47969219|47978816 ACIN1 0 0 2
chr7:47969219|47978816 LIN28A 1 0 0
chr7:47969219|47978816 FXR1 1 0 0
chr7:47969219|47978816 BCCIP 1 0 0
chr7:47969219|47978816 SND1 1 0 0
chr7:47969219|47978816 IGF2BP1 2 0 3
chr7:47969219|47978816 DICER1 1 1 0
chr7:47969219|47978816 IGF2BP3 0 0 1
chr7:47969219|47978816 IGF2BP2 1 0 10
chr7:47969219|47978816 HNRNPUL1 1 0 0
chr7:47969219|47978816 TARDBP 2 0 0
chr7:47969219|47978816 YTHDC1 1 0 0
chr7:47969219|47978816 FBL 3 2 5
chr7:47969219|47978816 BUD13 0 1 2
chr7:47969219|47978816 RBFOX2 1 2 0
chr7:47969219|47978816 CNBP 0 0 1
chr7:47969219|47978816 CSTF2T 6 0 4
chr7:47969219|47978816 FXR2 1 0 0
chr7:47969219|47978816 TIA1 1 0 0
chr7:47969219|47978816 ILF3 0 0 1
chr7:47969219|47978816 XRN2 1 0 0
chr7:47969219|47978816 ALKBH5 0 0 1
chr7:47969219|47978816 EIF4A3 4 4 15
chr7:47969219|47978816 AGO2 1 0 5