CircRNA Information

General Information
circRNA Basic Information
CircID chr7:50392921|50393084
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TTGCTGTCTTTACTATCCTAGCCTTTGTTCTCATAAAAAATATGCCAGTGCTTCTTTCCTGCTGACTGAATGAAGGGTCCCTCGCTCACCTGGCATCTGAAGCCATTCATCCTGTGGCAGAGCTGCCTAGGACACCTTCACTTTTCCTGCTTCCCCATGGGTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:50392921|50393084 hsa-miR-205-5p 0 0 1
chr7:50392921|50393084 hsa-miR-205-3p 0 0 1
chr7:50392921|50393084 hsa-miR-214-5p 0 0 1
chr7:50392921|50393084 hsa-miR-214-3p 0 0 1
chr7:50392921|50393084 hsa-miR-146a-5p 0 0 1
chr7:50392921|50393084 hsa-miR-146a-3p 0 0 1
chr7:50392921|50393084 hsa-miR-135b-5p 0 0 1
chr7:50392921|50393084 hsa-miR-135b-3p 0 0 1
chr7:50392921|50393084 hsa-miR-493-5p 0 0 1
chr7:50392921|50393084 hsa-miR-493-3p 0 0 1
chr7:50392921|50393084 hsa-miR-589-5p 0 0 1
chr7:50392921|50393084 hsa-miR-589-3p 0 0 1
chr7:50392921|50393084 hsa-miR-660-5p 0 0 1
chr7:50392921|50393084 hsa-miR-660-3p 0 0 1
chr7:50392921|50393084 hsa-miR-1298-5p 0 0 1
chr7:50392921|50393084 hsa-miR-1298-3p 0 0 1
chr7:50392921|50393084 hsa-miR-922 0 0 1
chr7:50392921|50393084 hsa-miR-940 0 0 1
chr7:50392921|50393084 hsa-miR-125a-3p 0 0 1
chr7:50392921|50393084 hsa-miR-146b-5p 0 0 1
chr7:50392921|50393084 hsa-miR-135a 0 0 1
chr7:50392921|50393084 hsa-miR-761 0 1 0
chr7:50392921|50393084 hsa-miR-1202 1 0 0
chr7:50392921|50393084 hsa-miR-711 1 0 0
chr7:50392921|50393084 hsa-miR-3146 1 0 0
chr7:50392921|50393084 hsa-miR-3196 1 0 0
chr7:50392921|50393084 hsa-miR-4271 1 1 0
chr7:50392921|50393084 hsa-miR-4291 0 1 0
chr7:50392921|50393084 hsa-miR-4498 1 0 0
chr7:50392921|50393084 hsa-miR-4505 1 0 0
chr7:50392921|50393084 hsa-miR-4530 1 0 0
chr7:50392921|50393084 hsa-miR-4654 1 0 0
chr7:50392921|50393084 hsa-miR-4660 0 1 0
chr7:50392921|50393084 hsa-miR-5698 1 0 0
chr7:50392921|50393084 hsa-miR-6090 1 0 0
chr7:50392921|50393084 hsa-miR-6124 0 1 0
chr7:50392921|50393084 hsa-miR-6165 0 1 0
chr7:50392921|50393084 hsa-miR-12115 1 1 0
chr7:50392921|50393084 hsa-miR-12121 1 0 0
chr7:50392921|50393084 hsa-miR-3194-3p 0 1 0
chr7:50392921|50393084 hsa-miR-671-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6825-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6510-5p 0 1 0
chr7:50392921|50393084 hsa-miR-6089 1 0 0
chr7:50392921|50393084 hsa-miR-4695-5p 1 0 0
chr7:50392921|50393084 hsa-miR-4722-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6730-5p 0 1 0
chr7:50392921|50393084 hsa-miR-3187-3p 1 0 0
chr7:50392921|50393084 hsa-miR-6768-5p 1 0 0
chr7:50392921|50393084 hsa-miR-486-3p 1 0 0
chr7:50392921|50393084 hsa-miR-6810-5p 1 0 0
chr7:50392921|50393084 hsa-miR-5006-5p 0 1 0
chr7:50392921|50393084 hsa-miR-6853-5p 1 0 0
chr7:50392921|50393084 hsa-miR-4640-5p 1 0 0
chr7:50392921|50393084 hsa-miR-1908-5p 1 0 0
chr7:50392921|50393084 hsa-miR-4690-5p 1 0 0
chr7:50392921|50393084 hsa-miR-4713-3p 1 0 0
chr7:50392921|50393084 hsa-miR-6828-5p 0 1 0
chr7:50392921|50393084 hsa-miR-5571-3p 0 1 0
chr7:50392921|50393084 hsa-miR-381-5p 1 0 0
chr7:50392921|50393084 hsa-miR-1343-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6803-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6751-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6797-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6808-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6875-5p 1 1 0
chr7:50392921|50393084 hsa-miR-7111-5p 1 0 0
chr7:50392921|50393084 hsa-miR-5196-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6780b-5p 1 1 0
chr7:50392921|50393084 hsa-miR-4649-5p 1 0 0
chr7:50392921|50393084 hsa-miR-4685-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6729-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6795-5p 1 0 0
chr7:50392921|50393084 hsa-miR-939-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6731-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6750-5p 1 0 0
chr7:50392921|50393084 hsa-miR-6791-5p 1 0 0
chr7:50392921|50393084 hsa-miR-320a-3p 1 0 0
chr7:50392921|50393084 hsa-miR-320b 1 0 0
chr7:50392921|50393084 hsa-miR-6817-5p 1 1 0
chr7:50392921|50393084 hsa-miR-4720-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:50392921|50393084
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MKGPSLTWHLKPFILWQSCLGHLHFSCFPMG
Nucleotide Sequence ATGAAGGGTCCCTCGCTCACCTGGCATCTGAAGCCATTCATCCTGTGGCAGAGCTGCCTAGGACACCTTCACTTTTCCTGCTTCCCCATGGGT
CircID chr7:50392921|50393084
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MNEGSLAHLASEAIHPVAELPRTPSLFLLPHGY
Nucleotide Sequence CTGAATGAAGGGTCCCTCGCTCACCTGGCATCTGAAGCCATTCATCCTGTGGCAGAGCTGCCTAGGACACCTTCACTTTTCCTGCTTCCCCATGGGTAC
CircID chr7:50392921|50393084
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MNGFRCQVSEGPFIQSAGKKHWHIFYENKG
Nucleotide Sequence ATGAATGGCTTCAGATGCCAGGTGAGCGAGGGACCCTTCATTCAGTCAGCAGGAAAGAAGCACTGGCATATTTTTTATGAGAACAAAGGCTAG
CircID chr7:50392921|50393084
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MPQDEWLQMPGERGTLHSVSRKEALAYFL
Nucleotide Sequence CTGCCACAGGATGAATGGCTTCAGATGCCAGGTGAGCGAGGGACCCTTCATTCAGTCAGCAGGAAAGAAGCACTGGCATATTTTTTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab