CircRNA Information

General Information
circRNA Basic Information
CircID chr7:5226311|5226516
Strand -
CircType exon
Host Gene ENSG00000157954.13;
Algorism CIRI2;
Sequence ATGGACGGCTTCCACAAGAATTTATTATCGCAATGAATGTGTAGCATGAGGGGGGTCTTATCTTTTAAGAGGGGCTTACTCTGTTGCCCAGGCTGCAGTGCAGTGGTACAGTCATTACTTATTGTAGCCTCTAGCTGCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTACCTGGGACTATAGGCGTGCACCATGCCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:5226311|5226516 hsa-miR-181c-5p 0 0 1
chr7:5226311|5226516 hsa-miR-181c-3p 0 0 1
chr7:5226311|5226516 hsa-miR-221-5p 0 0 1
chr7:5226311|5226516 hsa-miR-221-3p 0 0 1
chr7:5226311|5226516 hsa-miR-222-5p 0 0 1
chr7:5226311|5226516 hsa-miR-222-3p 0 0 1
chr7:5226311|5226516 hsa-miR-181d-5p 0 0 1
chr7:5226311|5226516 hsa-miR-181d-3p 0 0 1
chr7:5226311|5226516 hsa-miR-510-5p 0 0 1
chr7:5226311|5226516 hsa-miR-510-3p 0 0 1
chr7:5226311|5226516 hsa-miR-578 0 0 1
chr7:5226311|5226516 hsa-miR-581 0 0 1
chr7:5226311|5226516 hsa-miR-612 0 1 1
chr7:5226311|5226516 hsa-miR-646 0 0 1
chr7:5226311|5226516 hsa-miR-661 0 0 1
chr7:5226311|5226516 hsa-miR-940 0 0 1
chr7:5226311|5226516 hsa-miR-943 0 0 1
chr7:5226311|5226516 hsa-miR-1827 0 1 1
chr7:5226311|5226516 hsa-miR-512-5p 0 0 1
chr7:5226311|5226516 hsa-miR-671-5p 0 0 1
chr7:5226311|5226516 hsa-miR-1225-3p 1 0 1
chr7:5226311|5226516 hsa-miR-485-5p 0 0 1
chr7:5226311|5226516 hsa-miR-1184 0 0 1
chr7:5226311|5226516 hsa-miR-338-5p 0 0 1
chr7:5226311|5226516 hsa-miR-509-3-5p 0 1 1
chr7:5226311|5226516 hsa-miR-509-5p 0 1 1
chr7:5226311|5226516 hsa-miR-1233 0 0 1
chr7:5226311|5226516 hsa-miR-181a 0 0 1
chr7:5226311|5226516 hsa-miR-181b 0 0 1
chr7:5226311|5226516 hsa-miR-664 0 0 1
chr7:5226311|5226516 hsa-miR-1285 0 0 1
chr7:5226311|5226516 hsa-miR-638 1 0 0
chr7:5226311|5226516 hsa-miR-665 1 1 0
chr7:5226311|5226516 hsa-miR-3137 1 1 0
chr7:5226311|5226516 hsa-miR-4298 1 0 0
chr7:5226311|5226516 hsa-miR-3929 0 1 0
chr7:5226311|5226516 hsa-miR-3937 1 0 0
chr7:5226311|5226516 hsa-miR-4449 1 0 0
chr7:5226311|5226516 hsa-miR-4478 0 1 0
chr7:5226311|5226516 hsa-miR-4656 1 1 0
chr7:5226311|5226516 hsa-miR-4673 0 1 0
chr7:5226311|5226516 hsa-miR-4739 1 0 0
chr7:5226311|5226516 hsa-miR-5685 0 1 0
chr7:5226311|5226516 hsa-miR-5787 1 1 0
chr7:5226311|5226516 hsa-miR-4433a-3p 1 0 0
chr7:5226311|5226516 hsa-miR-6894-5p 1 1 0
chr7:5226311|5226516 hsa-miR-6089 1 0 0
chr7:5226311|5226516 hsa-miR-4695-5p 1 1 0
chr7:5226311|5226516 hsa-miR-4722-5p 1 1 0
chr7:5226311|5226516 hsa-miR-2467-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6798-5p 1 1 0
chr7:5226311|5226516 hsa-miR-2467-3p 1 0 0
chr7:5226311|5226516 hsa-miR-4793-3p 0 1 0
chr7:5226311|5226516 hsa-miR-6821-5p 1 0 0
chr7:5226311|5226516 hsa-miR-4640-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6771-5p 1 0 0
chr7:5226311|5226516 hsa-miR-7156-3p 0 1 0
chr7:5226311|5226516 hsa-miR-6769a-3p 1 1 0
chr7:5226311|5226516 hsa-miR-181b-5p 0 1 0
chr7:5226311|5226516 hsa-miR-6866-5p 0 1 0
chr7:5226311|5226516 hsa-let-7e-5p 1 1 0
chr7:5226311|5226516 hsa-miR-6886-3p 1 0 0
chr7:5226311|5226516 hsa-miR-4749-3p 1 0 0
chr7:5226311|5226516 hsa-miR-3664-3p 0 1 0
chr7:5226311|5226516 hsa-miR-1249-3p 1 0 0
chr7:5226311|5226516 hsa-miR-4797-5p 0 1 0
chr7:5226311|5226516 hsa-miR-4763-3p 1 0 0
chr7:5226311|5226516 hsa-miR-6787-5p 1 0 0
chr7:5226311|5226516 hsa-miR-5001-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6743-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6756-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6813-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6851-5p 1 0 0
chr7:5226311|5226516 hsa-miR-7107-5p 0 1 0
chr7:5226311|5226516 hsa-miR-1249-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6722-3p 1 0 0
chr7:5226311|5226516 hsa-miR-6774-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6808-5p 0 1 0
chr7:5226311|5226516 hsa-miR-6846-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6848-5p 1 0 0
chr7:5226311|5226516 hsa-miR-6858-5p 1 0 0
chr7:5226311|5226516 hsa-miR-3187-5p 0 1 0
chr7:5226311|5226516 hsa-miR-1285-3p 1 1 0
chr7:5226311|5226516 hsa-miR-6884-5p 1 1 0
chr7:5226311|5226516 hsa-miR-6807-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:5226311|5226516
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MCSMRGVLSFKRGLLCCPGCSAVVQSLLIVASSCWAQAILLPQPPEYLGL
Nucleotide Sequence ATGTGTAGCATGAGGGGGGTCTTATCTTTTAAGAGGGGCTTACTCTGTTGCCCAGGCTGCAGTGCAGTGGTACAGTCATTACTTATTGTAGCCTCTAGCTGCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCTGAGTACCTGGGACTATAG
CircID chr7:5226311|5226516
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MQPGQQSKPLLKDKTPLMLHIHCDNKFLWKPS
Nucleotide Sequence CTGCAGCCTGGGCAACAGAGTAAGCCCCTCTTAAAAGATAAGACCCCCCTCATGCTACACATTCATTGCGATAATAAATTCTTGTGGAAGCCGTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab