CircRNA Information

General Information
circRNA Basic Information
CircID chr7:5332292|5332449
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTTCCTTTGTTTCTTAAGAGTCAACTCTTGCTCTGTCACCAGGCTGGAGCGCAGTGGCCTGATCATGGCTCACTGCAGCCTTTACCTCCTGGCCTCTAGCAGTCCTCCTGCCTCAGCCTCCCAAATAGCTGGATCTTCAGACACATGTCACTGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:5332292|5332449 hsa-miR-383-5p 0 0 1
chr7:5332292|5332449 hsa-miR-383-3p 0 0 1
chr7:5332292|5332449 hsa-miR-766-5p 0 0 1
chr7:5332292|5332449 hsa-miR-766-3p 0 0 1
chr7:5332292|5332449 hsa-miR-665 1 1 1
chr7:5332292|5332449 hsa-miR-940 0 0 1
chr7:5332292|5332449 hsa-miR-1288-5p 0 0 1
chr7:5332292|5332449 hsa-miR-1288-3p 0 0 1
chr7:5332292|5332449 hsa-miR-1827 0 1 1
chr7:5332292|5332449 hsa-miR-485-5p 0 0 1
chr7:5332292|5332449 hsa-miR-542-3p 0 0 1
chr7:5332292|5332449 hsa-miR-219-1-3p 0 0 1
chr7:5332292|5332449 hsa-miR-3131 1 1 0
chr7:5332292|5332449 hsa-miR-4299 0 1 0
chr7:5332292|5332449 hsa-miR-4298 1 0 0
chr7:5332292|5332449 hsa-miR-4252 0 1 0
chr7:5332292|5332449 hsa-miR-3929 0 1 0
chr7:5332292|5332449 hsa-miR-3135b 1 0 0
chr7:5332292|5332449 hsa-miR-4478 0 1 0
chr7:5332292|5332449 hsa-miR-4533 1 0 0
chr7:5332292|5332449 hsa-miR-4656 1 1 0
chr7:5332292|5332449 hsa-miR-4706 1 0 0
chr7:5332292|5332449 hsa-miR-4739 1 0 0
chr7:5332292|5332449 hsa-miR-5190 0 1 0
chr7:5332292|5332449 hsa-miR-5572 1 0 0
chr7:5332292|5332449 hsa-miR-5787 1 1 0
chr7:5332292|5332449 hsa-miR-8052 1 1 0
chr7:5332292|5332449 hsa-miR-10226 1 1 0
chr7:5332292|5332449 hsa-miR-12119 1 0 0
chr7:5332292|5332449 hsa-miR-143-5p 0 1 0
chr7:5332292|5332449 hsa-miR-17-3p 0 1 0
chr7:5332292|5332449 hsa-miR-6765-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6894-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6720-5p 1 1 0
chr7:5332292|5332449 hsa-miR-219a-1-3p 0 1 0
chr7:5332292|5332449 hsa-miR-6799-5p 1 0 0
chr7:5332292|5332449 hsa-miR-3692-5p 1 0 0
chr7:5332292|5332449 hsa-miR-1227-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6089 1 0 0
chr7:5332292|5332449 hsa-miR-3192-5p 1 1 0
chr7:5332292|5332449 hsa-miR-6880-5p 1 0 0
chr7:5332292|5332449 hsa-miR-4653-3p 1 0 0
chr7:5332292|5332449 hsa-miR-4722-5p 1 1 0
chr7:5332292|5332449 hsa-miR-3677-5p 1 0 0
chr7:5332292|5332449 hsa-miR-7160-5p 1 0 0
chr7:5332292|5332449 hsa-miR-191-3p 0 1 0
chr7:5332292|5332449 hsa-miR-6829-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6732-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6798-5p 1 0 0
chr7:5332292|5332449 hsa-miR-1224-5p 1 0 0
chr7:5332292|5332449 hsa-miR-2467-3p 1 0 0
chr7:5332292|5332449 hsa-miR-5006-5p 1 0 0
chr7:5332292|5332449 hsa-miR-7109-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6740-5p 1 0 0
chr7:5332292|5332449 hsa-miR-4640-5p 1 0 0
chr7:5332292|5332449 hsa-let-7d-5p 1 1 0
chr7:5332292|5332449 hsa-miR-6771-5p 1 0 0
chr7:5332292|5332449 hsa-let-7b-5p 1 1 0
chr7:5332292|5332449 hsa-miR-4446-3p 0 1 0
chr7:5332292|5332449 hsa-miR-149-3p 1 0 0
chr7:5332292|5332449 hsa-miR-6866-5p 0 1 0
chr7:5332292|5332449 hsa-let-7c-5p 0 1 0
chr7:5332292|5332449 hsa-let-7e-5p 1 1 0
chr7:5332292|5332449 hsa-let-7a-5p 0 1 0
chr7:5332292|5332449 hsa-miR-4717-5p 0 1 0
chr7:5332292|5332449 hsa-miR-4772-5p 0 1 0
chr7:5332292|5332449 hsa-miR-1207-5p 1 1 0
chr7:5332292|5332449 hsa-miR-1233-5p 1 0 0
chr7:5332292|5332449 hsa-miR-1273h-5p 1 1 0
chr7:5332292|5332449 hsa-miR-4763-3p 1 0 0
chr7:5332292|5332449 hsa-miR-6778-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6787-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6812-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6865-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6893-5p 0 1 0
chr7:5332292|5332449 hsa-miR-6726-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6743-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6756-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6813-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6851-5p 1 0 0
chr7:5332292|5332449 hsa-miR-7107-5p 1 1 0
chr7:5332292|5332449 hsa-miR-10401-5p 1 0 0
chr7:5332292|5332449 hsa-miR-11181-3p 1 0 0
chr7:5332292|5332449 hsa-miR-6722-3p 1 0 0
chr7:5332292|5332449 hsa-miR-6774-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6779-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6780a-5p 1 1 0
chr7:5332292|5332449 hsa-miR-6797-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6808-5p 1 0 0
chr7:5332292|5332449 hsa-miR-7111-5p 1 0 0
chr7:5332292|5332449 hsa-miR-4728-5p 1 0 0
chr7:5332292|5332449 hsa-miR-328-5p 1 0 0
chr7:5332292|5332449 hsa-miR-449c-5p 1 1 0
chr7:5332292|5332449 hsa-miR-4649-5p 1 0 0
chr7:5332292|5332449 hsa-miR-4726-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6794-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6848-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6883-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6831-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6845-5p 1 0 0
chr7:5332292|5332449 hsa-miR-939-5p 1 0 0
chr7:5332292|5332449 hsa-miR-324-3p 0 1 0
chr7:5332292|5332449 hsa-miR-6762-5p 1 0 0
chr7:5332292|5332449 hsa-miR-4756-5p 1 0 0
chr7:5332292|5332449 hsa-miR-6884-5p 1 1 0
chr7:5332292|5332449 hsa-miR-5195-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr7:5332292|5332449
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence LFLCFLRVNSCSVTRLERSGLIMAHCSLYLLASSSPPASASQIAGSSDTCHC
Nucleotide Sequence CTGTTCCTTTGTTTCTTAAGAGTCAACTCTTGCTCTGTCACCAGGCTGGAGCGCAGTGGCCTGATCATGGCTCACTGCAGCCTTTACCTCCTGGCCTCTAGCAGTCCTCCTGCCTCAGCCTCCCAAATAGCTGGATCTTCAGACACATGTCACTGC
CircID chr7:5332292|5332449
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MFLKSQLLLCHQAGAQWPDHGSLQPLPPGL
Nucleotide Sequence TTGTTTCTTAAGAGTCAACTCTTGCTCTGTCACCAGGCTGGAGCGCAGTGGCCTGATCATGGCTCACTGCAGCCTTTACCTCCTGGCCTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab