CircRNA Information

General Information
circRNA Basic Information
CircID chr7:55205868|55206197
Strand +
CircType exon
Host Gene ENSG00000146648.14;
Algorism CIRI2;
Sequence CTGCCATGACTTGATACAGTACCGATCCGGCCTGCTGGGGCCATGAAGGCCTTCTTGGATCTTTAGTGTTTTGCAGTGGAAGCCTTGAAGCAGAACCACTGGAATCAAGCATCCTCTGGAAGACTTGTGGCTTGTGCTCCTTGCTCACAGTTGGGCCTGGATGAACTCAGGGTAGCAAGTGCTACCAGCAAGCTTCTTCCTTGTTGGAAGAGCCCATTGAAGTAAAAATCAATAGCGACAATGAAAAACTCCAAGATCCCCAATCAATAAAAATCCTCACATATACTTTTTTTTTTTTTCAAATATACCTCTTTGAAAGATAAATTTCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:55205868|55206197 hsa-miR-10a-5p 0 0 1
chr7:55205868|55206197 hsa-miR-10a-3p 0 0 1
chr7:55205868|55206197 hsa-miR-10b-5p 0 0 1
chr7:55205868|55206197 hsa-miR-10b-3p 0 0 1
chr7:55205868|55206197 hsa-miR-205-5p 0 0 1
chr7:55205868|55206197 hsa-miR-205-3p 0 0 1
chr7:55205868|55206197 hsa-miR-214-5p 0 0 1
chr7:55205868|55206197 hsa-miR-214-3p 0 0 1
chr7:55205868|55206197 hsa-miR-202-5p 0 0 1
chr7:55205868|55206197 hsa-miR-202-3p 0 0 1
chr7:55205868|55206197 hsa-miR-432-5p 0 0 1
chr7:55205868|55206197 hsa-miR-432-3p 0 0 1
chr7:55205868|55206197 hsa-miR-583 0 0 1
chr7:55205868|55206197 hsa-miR-607 0 0 1
chr7:55205868|55206197 hsa-miR-1264 0 0 1
chr7:55205868|55206197 hsa-miR-1183 0 0 1
chr7:55205868|55206197 hsa-miR-1236-5p 0 0 1
chr7:55205868|55206197 hsa-miR-1236-3p 0 0 1
chr7:55205868|55206197 hsa-miR-1290 0 0 1
chr7:55205868|55206197 hsa-miR-1294 1 0 1
chr7:55205868|55206197 hsa-miR-548l 0 0 1
chr7:55205868|55206197 hsa-miR-548n 0 0 1
chr7:55205868|55206197 hsa-miR-1825 0 0 1
chr7:55205868|55206197 hsa-miR-140-5p 0 1 1
chr7:55205868|55206197 hsa-miR-145-5p 0 0 1
chr7:55205868|55206197 hsa-miR-199a-5p 0 0 1
chr7:55205868|55206197 hsa-miR-525-5p 0 1 1
chr7:55205868|55206197 hsa-miR-509-3p 1 0 1
chr7:55205868|55206197 hsa-miR-199b-5p 0 0 1
chr7:55205868|55206197 hsa-miR-520a-5p 0 0 1
chr7:55205868|55206197 hsa-miR-125a-5p 0 0 1
chr7:55205868|55206197 hsa-miR-125b 0 0 1
chr7:55205868|55206197 hsa-miR-138 0 0 1
chr7:55205868|55206197 hsa-miR-1185 0 0 1
chr7:55205868|55206197 hsa-miR-638 1 0 0
chr7:55205868|55206197 hsa-miR-761 0 1 0
chr7:55205868|55206197 hsa-miR-1182 1 0 0
chr7:55205868|55206197 hsa-miR-3142 0 1 0
chr7:55205868|55206197 hsa-miR-4260 1 0 0
chr7:55205868|55206197 hsa-miR-4450 1 0 0
chr7:55205868|55206197 hsa-miR-4493 0 1 0
chr7:55205868|55206197 hsa-miR-4530 0 1 0
chr7:55205868|55206197 hsa-miR-4533 0 1 0
chr7:55205868|55206197 hsa-miR-4682 0 1 0
chr7:55205868|55206197 hsa-miR-4689 1 0 0
chr7:55205868|55206197 hsa-miR-5194 1 0 0
chr7:55205868|55206197 hsa-miR-5787 1 0 0
chr7:55205868|55206197 hsa-miR-8053 1 0 0
chr7:55205868|55206197 hsa-miR-8088 1 0 0
chr7:55205868|55206197 hsa-miR-203a-5p 0 1 0
chr7:55205868|55206197 hsa-miR-92a-1-5p 1 0 0
chr7:55205868|55206197 hsa-miR-92a-2-5p 1 0 0
chr7:55205868|55206197 hsa-miR-1287-5p 0 1 0
chr7:55205868|55206197 hsa-miR-224-5p 0 1 0
chr7:55205868|55206197 hsa-miR-6089 1 0 0
chr7:55205868|55206197 hsa-miR-874-5p 0 1 0
chr7:55205868|55206197 hsa-miR-6796-5p 1 0 0
chr7:55205868|55206197 hsa-miR-542-5p 1 0 0
chr7:55205868|55206197 hsa-miR-4690-5p 0 1 0
chr7:55205868|55206197 hsa-miR-4713-3p 1 0 0
chr7:55205868|55206197 hsa-miR-4743-5p 1 1 0
chr7:55205868|55206197 hsa-miR-6830-5p 0 1 0
chr7:55205868|55206197 hsa-miR-4707-5p 1 0 0
chr7:55205868|55206197 hsa-miR-3158-3p 1 0 0
chr7:55205868|55206197 hsa-miR-6509-3p 0 1 0
chr7:55205868|55206197 hsa-miR-6752-5p 1 0 0
chr7:55205868|55206197 hsa-miR-6756-5p 1 0 0
chr7:55205868|55206197 hsa-miR-6803-5p 1 0 0
chr7:55205868|55206197 hsa-miR-7110-5p 1 0 0
chr7:55205868|55206197 hsa-miR-6751-5p 1 0 0
chr7:55205868|55206197 hsa-miR-6763-5p 1 0 0
chr7:55205868|55206197 hsa-miR-6858-5p 1 0 0
chr7:55205868|55206197 hsa-miR-939-5p 1 0 0
chr7:55205868|55206197 hsa-miR-3679-5p 1 0 0
chr7:55205868|55206197 hsa-miR-769-3p 1 0 0
chr7:55205868|55206197 hsa-miR-10400-3p 0 1 0
chr7:55205868|55206197 hsa-miR-3619-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:55205868|55206197
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MKQNHWNQASSGRLVACAPCSQLGLDELRVASATSKLLPCWKSPLK
Nucleotide Sequence TTGAAGCAGAACCACTGGAATCAAGCATCCTCTGGAAGACTTGTGGCTTGTGCTCCTTGCTCACAGTTGGGCCTGGATGAACTCAGGGTAGCAAGTGCTACCAGCAAGCTTCTTCCTTGTTGGAAGAGCCCATTGAAGTAA
CircID chr7:55205868|55206197
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MLEEPIEVKINSDNEKLQDPQSIKILTYTFFFFQIYLFER
Nucleotide Sequence TTGTTGGAAGAGCCCATTGAAGTAAAAATCAATAGCGACAATGAAAAACTCCAAGATCCCCAATCAATAAAAATCCTCACATATACTTTTTTTTTTTTTCAAATATACCTCTTTGAAAGATAA
CircID chr7:55205868|55206197
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MIPVVLLQGFHCKTLKIQEGLHGPSRPDRYCIKSWQ
Nucleotide Sequence TTGATTCCAGTGGTTCTGCTTCAAGGCTTCCACTGCAAAACACTAAAGATCCAAGAAGGCCTTCATGGCCCCAGCAGGCCGGATCGGTACTGTATCAAGTCATGGCAG
CircID chr7:55205868|55206197
ORF Type ORF4
Protein Length 52
Nucleotide Length 159
Protein Sequence MGILEFFIVAIDFYFNGLFQQGRSLLVALATLSSSRPNCEQGAQATSLPEDA
Nucleotide Sequence TTGGGGATCTTGGAGTTTTTCATTGTCGCTATTGATTTTTACTTCAATGGGCTCTTCCAACAAGGAAGAAGCTTGCTGGTAGCACTTGCTACCCTGAGTTCATCCAGGCCCAACTGTGAGCAAGGAGCACAAGCCACAAGTCTTCCAGAGGATGCTTGA
CircID chr7:55205868|55206197
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MLDSSGSASRLPLQNTKDPRRPSWPQQAGSVLYQVMA
Nucleotide Sequence ATGCTTGATTCCAGTGGTTCTGCTTCAAGGCTTCCACTGCAAAACACTAAAGATCCAAGAAGGCCTTCATGGCCCCAGCAGGCCGGATCGGTACTGTATCAAGTCATGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab