CircRNA Information

General Information
circRNA Basic Information
CircID chr7:5605814|5606009
Strand +
CircType exon
Host Gene ENSG00000075618.16;
Algorism CIRI2;
Sequence ACCACAAGGGTCAGTCCTAGCCCACCCGACAGCTTCCCTTCCCAAGCAGGGGTTTCGGGGACAGTGCACCAGGGAGGGCCACTGACAGGCTTGGGACATGTGCCCAGCTCTCCTGGGGGGCTGGGAGGAGGTGGCTGGGAGAGGCAAAAGATTCCAGTTACACTACACGCCCAGGGCTCCCAGCCCCCAACCGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:5605814|5606009 hsa-miR-223-5p 0 0 1
chr7:5605814|5606009 hsa-miR-223-3p 0 0 1
chr7:5605814|5606009 hsa-miR-150-5p 0 0 1
chr7:5605814|5606009 hsa-miR-150-3p 0 0 1
chr7:5605814|5606009 hsa-miR-328-5p 0 0 1
chr7:5605814|5606009 hsa-miR-328-3p 0 0 1
chr7:5605814|5606009 hsa-miR-504-5p 0 0 1
chr7:5605814|5606009 hsa-miR-504-3p 0 0 1
chr7:5605814|5606009 hsa-miR-585-5p 0 0 1
chr7:5605814|5606009 hsa-miR-585-3p 0 0 1
chr7:5605814|5606009 hsa-miR-612 0 0 1
chr7:5605814|5606009 hsa-miR-541-5p 0 0 1
chr7:5605814|5606009 hsa-miR-541-3p 0 0 1
chr7:5605814|5606009 hsa-miR-665 0 0 1
chr7:5605814|5606009 hsa-miR-920 0 0 1
chr7:5605814|5606009 hsa-miR-663b 0 0 1
chr7:5605814|5606009 hsa-miR-1291 0 0 1
chr7:5605814|5606009 hsa-miR-1275 0 0 1
chr7:5605814|5606009 hsa-miR-532-3p 0 0 1
chr7:5605814|5606009 hsa-miR-654-5p 0 0 1
chr7:5605814|5606009 hsa-miR-361-3p 0 0 1
chr7:5605814|5606009 hsa-miR-582-3p 0 0 1
chr7:5605814|5606009 hsa-miR-142-3p 0 0 1
chr7:5605814|5606009 hsa-miR-1233 0 0 1
chr7:5605814|5606009 hsa-miR-1285 0 0 1
chr7:5605814|5606009 hsa-miR-1268 0 0 1
chr7:5605814|5606009 hsa-miR-623 1 0 0
chr7:5605814|5606009 hsa-miR-637 1 0 0
chr7:5605814|5606009 hsa-miR-762 1 0 0
chr7:5605814|5606009 hsa-miR-4515 1 0 0
chr7:5605814|5606009 hsa-miR-4741 1 0 0
chr7:5605814|5606009 hsa-miR-8069 1 0 0
chr7:5605814|5606009 hsa-miR-4697-3p 1 0 0
chr7:5605814|5606009 hsa-miR-6735-3p 1 0 0
chr7:5605814|5606009 hsa-miR-7113-3p 1 0 0
chr7:5605814|5606009 hsa-miR-4667-3p 1 0 0
chr7:5605814|5606009 hsa-miR-6760-3p 1 0 0
chr7:5605814|5606009 hsa-miR-188-5p 1 0 0
chr7:5605814|5606009 hsa-miR-6756-5p 1 0 0
chr7:5605814|5606009 hsa-miR-6803-5p 1 0 0
chr7:5605814|5606009 hsa-miR-3620-5p 1 0 0
chr7:5605814|5606009 hsa-miR-6846-5p 1 0 0
chr7:5605814|5606009 hsa-miR-6848-5p 1 0 0
chr7:5605814|5606009 hsa-miR-10396a-3p 1 0 0
chr7:5605814|5606009 hsa-miR-6731-5p 1 0 0
chr7:5605814|5606009 hsa-miR-10398-3p 1 0 0
chr7:5605814|5606009 hsa-miR-6775-3p 1 0 0
chr7:5605814|5606009 hsa-miR-4723-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:5605814|5606009
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MTGLGHVPSSPGGLGGGGWERQKIPVTLHAQGSQPPTV
Nucleotide Sequence CTGACAGGCTTGGGACATGTGCCCAGCTCTCCTGGGGGGCTGGGAGGAGGTGGCTGGGAGAGGCAAAAGATTCCAGTTACACTACACGCCCAGGGCTCCCAGCCCCCAACCGTC
CircID chr7:5605814|5606009
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MCPALLGGWEEVAGRGKRFQLHYTPRAPSPQPS
Nucleotide Sequence ATGTGCCCAGCTCTCCTGGGGGGCTGGGAGGAGGTGGCTGGGAGAGGCAAAAGATTCCAGTTACACTACACGCCCAGGGCTCCCAGCCCCCAACCGTCC
CircID chr7:5605814|5606009
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MESFASPSHLLPAPQESWAHVPSLSVALPGALSPKPLLGKGSCRVG
Nucleotide Sequence CTGGAATCTTTTGCCTCTCCCAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCACATGTCCCAAGCCTGTCAGTGGCCCTCCCTGGTGCACTGTCCCCGAAACCCCTGCTTGGGAAGGGAAGCTGTCGGGTGGGCTAG
CircID chr7:5605814|5606009
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MPLPATSSQPPRRAGHMSQACQWPSLVHCPRNPCLGREAVGWARTDPCG
Nucleotide Sequence TTGCCTCTCCCAGCCACCTCCTCCCAGCCCCCCAGGAGAGCTGGGCACATGTCCCAAGCCTGTCAGTGGCCCTCCCTGGTGCACTGTCCCCGAAACCCCTGCTTGGGAAGGGAAGCTGTCGGGTGGGCTAGGACTGACCCTTGTGGT
CircID chr7:5605814|5606009
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MGTCPKPVSGPPWCTVPETPAWEGKLSGGLGLTLV
Nucleotide Sequence CTGGGCACATGTCCCAAGCCTGTCAGTGGCCCTCCCTGGTGCACTGTCCCCGAAACCCCTGCTTGGGAAGGGAAGCTGTCGGGTGGGCTAGGACTGACCCTTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab