CircRNA Information

General Information
circRNA Basic Information
CircID chr7:5622446|5622686
Strand +
CircType exon
Host Gene ENSG00000011275.17;
Algorism CIRI2;
Sequence GGATCCATAATAAAGACGTCCCAAATGGTGGAGTTCGGAGAGAGCTGCGATGTGAACTGCCCCTCCCCTCGCATCCCCCAGGCCACCAACGGCAGTCCTTCTGCCTTGTCCATGGCATAGGCCATAGACCAGGTCCCTGCTGCTCACACCTGGGCCTCTCCTCGGAGCCGACCCCTGGGTAGCAAGGCAGCCGAGAGCATCTCCCTGGAGGGGCCCACGGTTGGGCCAAGGGCAGAGGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:5622446|5622686 hsa-miR-15a-5p 0 0 1
chr7:5622446|5622686 hsa-miR-15a-3p 0 0 1
chr7:5622446|5622686 hsa-miR-23a-5p 0 0 1
chr7:5622446|5622686 hsa-miR-23a-3p 0 0 1
chr7:5622446|5622686 hsa-miR-214-5p 0 0 1
chr7:5622446|5622686 hsa-miR-214-3p 0 0 1
chr7:5622446|5622686 hsa-miR-15b-5p 0 0 1
chr7:5622446|5622686 hsa-miR-15b-3p 0 0 1
chr7:5622446|5622686 hsa-miR-23b-5p 0 0 1
chr7:5622446|5622686 hsa-miR-23b-3p 0 0 1
chr7:5622446|5622686 hsa-miR-195-5p 0 0 1
chr7:5622446|5622686 hsa-miR-195-3p 0 0 1
chr7:5622446|5622686 hsa-miR-328-5p 0 0 1
chr7:5622446|5622686 hsa-miR-328-3p 0 0 1
chr7:5622446|5622686 hsa-miR-424-5p 0 0 1
chr7:5622446|5622686 hsa-miR-424-3p 0 0 1
chr7:5622446|5622686 hsa-miR-492 0 0 1
chr7:5622446|5622686 hsa-miR-497-5p 0 0 1
chr7:5622446|5622686 hsa-miR-497-3p 0 0 1
chr7:5622446|5622686 hsa-miR-601 0 0 1
chr7:5622446|5622686 hsa-miR-625-5p 0 0 1
chr7:5622446|5622686 hsa-miR-625-3p 0 0 1
chr7:5622446|5622686 hsa-miR-631 0 0 1
chr7:5622446|5622686 hsa-miR-637 0 0 1
chr7:5622446|5622686 hsa-miR-661 0 0 1
chr7:5622446|5622686 hsa-miR-298 0 1 1
chr7:5622446|5622686 hsa-miR-938 0 0 1
chr7:5622446|5622686 hsa-miR-1246 0 0 1
chr7:5622446|5622686 hsa-miR-1275 0 0 1
chr7:5622446|5622686 hsa-miR-1288-5p 0 0 1
chr7:5622446|5622686 hsa-miR-1288-3p 0 0 1
chr7:5622446|5622686 hsa-miR-1307-5p 0 0 1
chr7:5622446|5622686 hsa-miR-1307-3p 0 0 1
chr7:5622446|5622686 hsa-miR-296-5p 0 0 1
chr7:5622446|5622686 hsa-miR-486-3p 0 1 1
chr7:5622446|5622686 hsa-miR-423-5p 0 1 1
chr7:5622446|5622686 hsa-miR-324-3p 0 0 1
chr7:5622446|5622686 hsa-miR-1302 0 0 1
chr7:5622446|5622686 hsa-miR-151-5p 0 0 1
chr7:5622446|5622686 hsa-miR-886-5p 0 0 1
chr7:5622446|5622686 hsa-miR-16 0 0 1
chr7:5622446|5622686 hsa-miR-658 1 0 0
chr7:5622446|5622686 hsa-miR-762 1 0 0
chr7:5622446|5622686 hsa-miR-663b 1 0 0
chr7:5622446|5622686 hsa-miR-1293 1 0 0
chr7:5622446|5622686 hsa-miR-1470 1 0 0
chr7:5622446|5622686 hsa-miR-2861 1 0 0
chr7:5622446|5622686 hsa-miR-3138 0 1 0
chr7:5622446|5622686 hsa-miR-3169 0 1 0
chr7:5622446|5622686 hsa-miR-4260 1 0 0
chr7:5622446|5622686 hsa-miR-3615 1 1 0
chr7:5622446|5622686 hsa-miR-3649 0 1 0
chr7:5622446|5622686 hsa-miR-3714 0 1 0
chr7:5622446|5622686 hsa-miR-3907 0 1 0
chr7:5622446|5622686 hsa-miR-4466 1 0 0
chr7:5622446|5622686 hsa-miR-3689c 1 0 0
chr7:5622446|5622686 hsa-miR-4525 0 1 0
chr7:5622446|5622686 hsa-miR-1587 1 0 0
chr7:5622446|5622686 hsa-miR-4660 0 1 0
chr7:5622446|5622686 hsa-miR-4706 1 0 0
chr7:5622446|5622686 hsa-miR-4739 1 0 0
chr7:5622446|5622686 hsa-miR-4741 1 0 0
chr7:5622446|5622686 hsa-miR-4784 0 1 0
chr7:5622446|5622686 hsa-miR-5698 1 0 0
chr7:5622446|5622686 hsa-miR-5787 1 0 0
chr7:5622446|5622686 hsa-miR-6090 1 0 0
chr7:5622446|5622686 hsa-miR-7704 0 1 0
chr7:5622446|5622686 hsa-miR-8072 1 0 0
chr7:5622446|5622686 hsa-miR-8089 1 0 0
chr7:5622446|5622686 hsa-miR-212-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6825-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6894-5p 1 0 0
chr7:5622446|5622686 hsa-miR-4708-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6799-5p 1 0 0
chr7:5622446|5622686 hsa-miR-8071 1 0 0
chr7:5622446|5622686 hsa-miR-3934-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6089 1 0 0
chr7:5622446|5622686 hsa-miR-6762-3p 1 0 0
chr7:5622446|5622686 hsa-miR-6721-5p 1 0 0
chr7:5622446|5622686 hsa-miR-7110-3p 0 1 0
chr7:5622446|5622686 hsa-miR-3180-3p 1 0 0
chr7:5622446|5622686 hsa-miR-6798-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6782-5p 1 0 0
chr7:5622446|5622686 hsa-miR-3150b-3p 0 1 0
chr7:5622446|5622686 hsa-miR-6888-5p 1 0 0
chr7:5622446|5622686 hsa-miR-5008-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6716-3p 0 1 0
chr7:5622446|5622686 hsa-miR-3934-3p 0 1 0
chr7:5622446|5622686 hsa-miR-6852-5p 0 1 0
chr7:5622446|5622686 hsa-miR-1226-5p 1 0 0
chr7:5622446|5622686 hsa-miR-1908-3p 1 0 0
chr7:5622446|5622686 hsa-miR-5001-3p 0 1 0
chr7:5622446|5622686 hsa-miR-4640-3p 0 1 0
chr7:5622446|5622686 hsa-miR-5010-5p 0 1 0
chr7:5622446|5622686 hsa-miR-1237-3p 1 0 0
chr7:5622446|5622686 hsa-miR-4638-5p 0 1 0
chr7:5622446|5622686 hsa-miR-2276-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6741-3p 0 1 0
chr7:5622446|5622686 hsa-miR-7113-5p 0 1 0
chr7:5622446|5622686 hsa-miR-5088-3p 1 1 0
chr7:5622446|5622686 hsa-miR-6795-3p 1 0 0
chr7:5622446|5622686 hsa-miR-502-5p 0 1 0
chr7:5622446|5622686 hsa-miR-3689b-3p 1 0 0
chr7:5622446|5622686 hsa-miR-4763-3p 1 0 0
chr7:5622446|5622686 hsa-miR-6778-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6816-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6870-5p 1 0 0
chr7:5622446|5622686 hsa-miR-1343-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6743-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6752-5p 1 1 0
chr7:5622446|5622686 hsa-miR-6754-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6803-5p 1 0 0
chr7:5622446|5622686 hsa-miR-7107-5p 1 0 0
chr7:5622446|5622686 hsa-miR-7110-5p 1 1 0
chr7:5622446|5622686 hsa-miR-6722-3p 1 1 0
chr7:5622446|5622686 hsa-miR-6763-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6779-5p 1 0 0
chr7:5622446|5622686 hsa-miR-7111-5p 1 0 0
chr7:5622446|5622686 hsa-miR-3620-5p 1 0 0
chr7:5622446|5622686 hsa-miR-4728-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6836-5p 1 0 0
chr7:5622446|5622686 hsa-miR-1237-5p 1 0 0
chr7:5622446|5622686 hsa-miR-3689a-3p 1 0 0
chr7:5622446|5622686 hsa-miR-4649-5p 1 0 0
chr7:5622446|5622686 hsa-miR-4749-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6729-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6846-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6848-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6858-5p 1 0 0
chr7:5622446|5622686 hsa-miR-6883-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6831-5p 1 0 0
chr7:5622446|5622686 hsa-miR-939-5p 1 0 0
chr7:5622446|5622686 hsa-miR-1910-3p 0 1 0
chr7:5622446|5622686 hsa-miR-6511a-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6773-5p 0 1 0
chr7:5622446|5622686 hsa-miR-4665-5p 1 1 0
chr7:5622446|5622686 hsa-miR-6877-3p 0 1 0
chr7:5622446|5622686 hsa-miR-3184-5p 1 1 0
chr7:5622446|5622686 hsa-miR-6791-5p 1 0 0
chr7:5622446|5622686 hsa-miR-4723-3p 1 0 0
chr7:5622446|5622686 hsa-miR-6769b-3p 1 0 0
chr7:5622446|5622686 hsa-miR-4768-5p 0 1 0
chr7:5622446|5622686 hsa-miR-3619-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6764-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6838-5p 0 1 0
chr7:5622446|5622686 hsa-miR-6506-5p 1 0 0
chr7:5622446|5622686 hsa-miR-4524a-5p 0 1 0
chr7:5622446|5622686 hsa-miR-3913-5p 0 1 0
chr7:5622446|5622686 hsa-miR-3136-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:5622446|5622686
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MVEFGESCDVNCPSPRIPQATNGSPSALSMA
Nucleotide Sequence ATGGTGGAGTTCGGAGAGAGCTGCGATGTGAACTGCCCCTCCCCTCGCATCCCCCAGGCCACCAACGGCAGTCCTTCTGCCTTGTCCATGGCATAG
CircID chr7:5622446|5622686
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MLLTPGPLLGADPWVARQPRASPWRGPRLGQGQRG
Nucleotide Sequence CTGCTGCTCACACCTGGGCCTCTCCTCGGAGCCGACCCCTGGGTAGCAAGGCAGCCGAGAGCATCTCCCTGGAGGGGCCCACGGTTGGGCCAAGGGCAGAGGGGG
CircID chr7:5622446|5622686
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MRCELPLPSHPPGHQRQSFCLVHGIGHRPGPCCSHLGLSSEPTPG
Nucleotide Sequence CTGCGATGTGAACTGCCCCTCCCCTCGCATCCCCCAGGCCACCAACGGCAGTCCTTCTGCCTTGTCCATGGCATAGGCCATAGACCAGGTCCCTGCTGCTCACACCTGGGCCTCTCCTCGGAGCCGACCCCTGGGTAG
CircID chr7:5622446|5622686
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MPLAQPWAPPGRCSRLPCYPGVGSEERPRCEQQGPGLWPMPWTRQKDCRWWPGGCEGRGSSHRSSLRTPPFGTSLLWI
Nucleotide Sequence CTGCCCTTGGCCCAACCGTGGGCCCCTCCAGGGAGATGCTCTCGGCTGCCTTGCTACCCAGGGGTCGGCTCCGAGGAGAGGCCCAGGTGTGAGCAGCAGGGACCTGGTCTATGGCCTATGCCATGGACAAGGCAGAAGGACTGCCGTTGGTGGCCTGGGGGATGCGAGGGGAGGGGCAGTTCACATCGCAGCTCTCTCCGAACTCCACCATTTGGGACGTCTTTATTATGGATC
CircID chr7:5622446|5622686
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MVYGLCHGQGRRTAVGGLGDARGGAVHIAALSELHHLGRLYYGS
Nucleotide Sequence CTGGTCTATGGCCTATGCCATGGACAAGGCAGAAGGACTGCCGTTGGTGGCCTGGGGGATGCGAGGGGAGGGGCAGTTCACATCGCAGCTCTCTCCGAACTCCACCATTTGGGACGTCTTTATTATGGATCC
CircID chr7:5622446|5622686
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MAYAMDKAEGLPLVAWGMRGEGQFTSQLSPNSTIWDVFIMD
Nucleotide Sequence ATGGCCTATGCCATGGACAAGGCAGAAGGACTGCCGTTGGTGGCCTGGGGGATGCGAGGGGAGGGGCAGTTCACATCGCAGCTCTCTCCGAACTCCACCATTTGGGACGTCTTTATTATGGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab