CircRNA Information

General Information
circRNA Basic Information
CircID chr7:5622631|5622901
Strand +
CircType exon
Host Gene ENSG00000011275.17;
Algorism CIRI2;
Sequence CTGCCCATGCACTTTGGCCCCCAGCCGCGGCATCGCTTCTGATGGCCCCGAATCCCCATTGAGCAGCACAAAGCCCGTTTGGGGTAGGAGTGTGGATGGAGAACCCTCCCCCAAGGCTGGTGTCTGTACCATTGCATCCTAAGTCAGCTTGAAGGGTAGGCTGGTTTTCTTCCCACCCCTTTCCTAGAAGGGCTACTGCTCCTGGAAGAGTGGACGGATCCATAATAAAGACGTCCCAAATGGTGGAGTTCGGAGAGAGCTGCGATGTGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:5622631|5622901 hsa-miR-17-5p 0 0 1
chr7:5622631|5622901 hsa-miR-17-3p 0 0 1
chr7:5622631|5622901 hsa-miR-20a-5p 0 0 1
chr7:5622631|5622901 hsa-miR-20a-3p 0 0 1
chr7:5622631|5622901 hsa-miR-23a-5p 0 0 1
chr7:5622631|5622901 hsa-miR-23a-3p 0 0 1
chr7:5622631|5622901 hsa-miR-93-5p 0 0 1
chr7:5622631|5622901 hsa-miR-93-3p 0 0 1
chr7:5622631|5622901 hsa-miR-106a-5p 0 0 1
chr7:5622631|5622901 hsa-miR-106a-3p 0 0 1
chr7:5622631|5622901 hsa-miR-23b-5p 0 0 1
chr7:5622631|5622901 hsa-miR-23b-3p 0 0 1
chr7:5622631|5622901 hsa-miR-136-5p 0 0 1
chr7:5622631|5622901 hsa-miR-136-3p 0 0 1
chr7:5622631|5622901 hsa-miR-106b-5p 0 0 1
chr7:5622631|5622901 hsa-miR-106b-3p 0 0 1
chr7:5622631|5622901 hsa-miR-20b-5p 0 0 1
chr7:5622631|5622901 hsa-miR-20b-3p 0 0 1
chr7:5622631|5622901 hsa-miR-498-5p 0 0 1
chr7:5622631|5622901 hsa-miR-498-3p 0 0 1
chr7:5622631|5622901 hsa-miR-519d-5p 0 0 1
chr7:5622631|5622901 hsa-miR-519d-3p 0 0 1
chr7:5622631|5622901 hsa-miR-520g-5p 0 0 1
chr7:5622631|5622901 hsa-miR-520g-3p 0 0 1
chr7:5622631|5622901 hsa-miR-520h 0 0 1
chr7:5622631|5622901 hsa-miR-608 0 0 1
chr7:5622631|5622901 hsa-miR-625-5p 0 0 1
chr7:5622631|5622901 hsa-miR-625-3p 0 0 1
chr7:5622631|5622901 hsa-miR-637 0 0 1
chr7:5622631|5622901 hsa-miR-651-5p 0 0 1
chr7:5622631|5622901 hsa-miR-651-3p 0 0 1
chr7:5622631|5622901 hsa-miR-665 0 0 1
chr7:5622631|5622901 hsa-miR-1226-5p 0 0 1
chr7:5622631|5622901 hsa-miR-1226-3p 0 0 1
chr7:5622631|5622901 hsa-miR-1236-5p 0 0 1
chr7:5622631|5622901 hsa-miR-1236-3p 0 0 1
chr7:5622631|5622901 hsa-miR-1246 0 0 1
chr7:5622631|5622901 hsa-miR-1265 0 0 1
chr7:5622631|5622901 hsa-miR-1275 0 0 1
chr7:5622631|5622901 hsa-miR-767-3p 0 0 1
chr7:5622631|5622901 hsa-miR-483-3p 0 0 1
chr7:5622631|5622901 hsa-miR-1302 0 0 1
chr7:5622631|5622901 hsa-miR-519b-3p 0 0 1
chr7:5622631|5622901 hsa-miR-519c-3p 0 0 1
chr7:5622631|5622901 hsa-miR-515-5p 0 0 1
chr7:5622631|5622901 hsa-miR-218 0 0 1
chr7:5622631|5622901 hsa-miR-129-3p 0 0 1
chr7:5622631|5622901 hsa-miR-519a 0 0 1
chr7:5622631|5622901 hsa-miR-572 1 0 0
chr7:5622631|5622901 hsa-miR-602 1 0 0
chr7:5622631|5622901 hsa-miR-4298 1 0 0
chr7:5622631|5622901 hsa-miR-4450 1 0 0
chr7:5622631|5622901 hsa-miR-135a-3p 1 0 0
chr7:5622631|5622901 hsa-miR-150-3p 1 0 0
chr7:5622631|5622901 hsa-miR-4731-5p 1 0 0
chr7:5622631|5622901 hsa-miR-4433a-3p 1 0 0
chr7:5622631|5622901 hsa-miR-6857-5p 1 0 0
chr7:5622631|5622901 hsa-miR-27a-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6727-5p 1 0 0
chr7:5622631|5622901 hsa-miR-127-3p 1 0 0
chr7:5622631|5622901 hsa-miR-6742-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6871-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6782-5p 1 0 0
chr7:5622631|5622901 hsa-miR-4640-5p 1 0 0
chr7:5622631|5622901 hsa-miR-92b-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6789-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6743-3p 1 0 0
chr7:5622631|5622901 hsa-miR-4763-3p 1 0 0
chr7:5622631|5622901 hsa-miR-6775-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6756-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6803-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6763-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6846-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6848-5p 1 0 0
chr7:5622631|5622901 hsa-miR-4758-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6855-5p 1 0 0
chr7:5622631|5622901 hsa-miR-6762-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:5622631|5622901
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MAPSRGIASDGPESPLSSTKPVWGRSVDGEPSPKAGVCTIAS
Nucleotide Sequence TTGGCCCCCAGCCGCGGCATCGCTTCTGATGGCCCCGAATCCCCATTGAGCAGCACAAAGCCCGTTTGGGGTAGGAGTGTGGATGGAGAACCCTCCCCCAAGGCTGGTGTCTGTACCATTGCATCCTAA
CircID chr7:5622631|5622901
ORF Type ORF2
Protein Length 74
Nucleotide Length 222
Protein Sequence MDPSTLPGAVALLGKGWEENQPTLQADLGCNGTDTSLGGGFSIHTPTPNGLCAAQWGFGAIRSDAAAGGQSAWA
Nucleotide Sequence ATGGATCCGTCCACTCTTCCAGGAGCAGTAGCCCTTCTAGGAAAGGGGTGGGAAGAAAACCAGCCTACCCTTCAAGCTGACTTAGGATGCAATGGTACAGACACCAGCCTTGGGGGAGGGTTCTCCATCCACACTCCTACCCCAAACGGGCTTTGTGCTGCTCAATGGGGATTCGGGGCCATCAGAAGCGATGCCGCGGCTGGGGGCCAAAGTGCATGGGCA
CircID chr7:5622631|5622901
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MVQTPALGEGSPSTLLPQTGFVLLNGDSGPSEAMPRLGAKVHGQ
Nucleotide Sequence ATGGTACAGACACCAGCCTTGGGGGAGGGTTCTCCATCCACACTCCTACCCCAAACGGGCTTTGTGCTGCTCAATGGGGATTCGGGGCCATCAGAAGCGATGCCGCGGCTGGGGGCCAAAGTGCATGGGCAG
CircID chr7:5622631|5622901
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MGRLYYGSVHSSRSSSPSRKGVGRKPAYPSS
Nucleotide Sequence TTGGGACGTCTTTATTATGGATCCGTCCACTCTTCCAGGAGCAGTAGCCCTTCTAGGAAAGGGGTGGGAAGAAAACCAGCCTACCCTTCAAGCTGA
CircID chr7:5622631|5622901
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MQWYRHQPWGRVLHPHSYPKRALCCSMGIRGHQKRCRGWGPKCMG
Nucleotide Sequence ATGCAATGGTACAGACACCAGCCTTGGGGGAGGGTTCTCCATCCACACTCCTACCCCAAACGGGCTTTGTGCTGCTCAATGGGGATTCGGGGCCATCAGAAGCGATGCCGCGGCTGGGGGCCAAAGTGCATGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab