CircRNA Information

General Information
circRNA Basic Information
CircID chr7:6162948|6163103
Strand +
CircType exon
Host Gene ENSG00000008256.14;
Algorism CIRI2;
Sequence GTTCTTAGGCTTTGTTACTGATACCTCAAATCGGAAGTTTTAGTTCTGAGAAAGGCAAGTCAGCGTTCTTGAAATGCCTGACTGGTAGATATGCAACTCTGGCCTCCAGTCTTCCATGAAAATAAATGCTGCCTGGACCCCCACCCAGACCACACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:6162948|6163103 hsa-let-7b-5p 0 0 1
chr7:6162948|6163103 hsa-let-7b-3p 0 0 1
chr7:6162948|6163103 hsa-let-7c-5p 0 0 1
chr7:6162948|6163103 hsa-let-7c-3p 0 0 1
chr7:6162948|6163103 hsa-let-7d-5p 0 0 1
chr7:6162948|6163103 hsa-let-7d-3p 0 0 1
chr7:6162948|6163103 hsa-let-7e-5p 0 0 1
chr7:6162948|6163103 hsa-let-7e-3p 0 0 1
chr7:6162948|6163103 hsa-miR-98-5p 0 0 1
chr7:6162948|6163103 hsa-miR-98-3p 0 0 1
chr7:6162948|6163103 hsa-miR-107 0 0 1
chr7:6162948|6163103 hsa-let-7g-5p 0 0 1
chr7:6162948|6163103 hsa-let-7g-3p 0 0 1
chr7:6162948|6163103 hsa-let-7i-5p 0 0 1
chr7:6162948|6163103 hsa-let-7i-3p 0 0 1
chr7:6162948|6163103 hsa-miR-448 0 0 1
chr7:6162948|6163103 hsa-miR-202-5p 0 0 1
chr7:6162948|6163103 hsa-miR-202-3p 0 0 1
chr7:6162948|6163103 hsa-miR-495-5p 0 0 1
chr7:6162948|6163103 hsa-miR-495-3p 0 0 1
chr7:6162948|6163103 hsa-miR-498-5p 0 0 1
chr7:6162948|6163103 hsa-miR-498-3p 0 0 1
chr7:6162948|6163103 hsa-miR-650 0 0 1
chr7:6162948|6163103 hsa-miR-802 0 0 1
chr7:6162948|6163103 hsa-miR-548e-5p 0 0 1
chr7:6162948|6163103 hsa-miR-548e-3p 0 0 1
chr7:6162948|6163103 hsa-miR-1293 0 0 1
chr7:6162948|6163103 hsa-miR-1304-5p 0 0 1
chr7:6162948|6163103 hsa-miR-1304-3p 0 0 1
chr7:6162948|6163103 hsa-miR-615-5p 0 0 1
chr7:6162948|6163103 hsa-miR-490-5p 0 0 1
chr7:6162948|6163103 hsa-miR-548a-3p 0 0 1
chr7:6162948|6163103 hsa-miR-548b-3p 0 0 1
chr7:6162948|6163103 hsa-miR-103 0 0 1
chr7:6162948|6163103 hsa-miR-7 0 0 1
chr7:6162948|6163103 hsa-miR-153 0 0 1
chr7:6162948|6163103 hsa-miR-644 0 0 1
chr7:6162948|6163103 hsa-miR-548f 0 0 1
chr7:6162948|6163103 hsa-let-7a 0 0 1
chr7:6162948|6163103 hsa-let-7f 0 0 1
chr7:6162948|6163103 hsa-miR-147 0 0 1
chr7:6162948|6163103 hsa-miR-601 1 0 0
chr7:6162948|6163103 hsa-miR-637 1 0 0
chr7:6162948|6163103 hsa-miR-762 1 0 0
chr7:6162948|6163103 hsa-miR-665 1 0 0
chr7:6162948|6163103 hsa-miR-3652 1 0 0
chr7:6162948|6163103 hsa-miR-3911 1 0 0
chr7:6162948|6163103 hsa-miR-3937 1 0 0
chr7:6162948|6163103 hsa-miR-4466 1 0 0
chr7:6162948|6163103 hsa-miR-4514 1 0 0
chr7:6162948|6163103 hsa-miR-4651 1 0 0
chr7:6162948|6163103 hsa-miR-4669 1 0 0
chr7:6162948|6163103 hsa-miR-4673 1 0 0
chr7:6162948|6163103 hsa-miR-4692 1 0 0
chr7:6162948|6163103 hsa-miR-4739 1 0 0
chr7:6162948|6163103 hsa-miR-6125 1 0 0
chr7:6162948|6163103 hsa-miR-7704 1 0 0
chr7:6162948|6163103 hsa-miR-8073 1 0 0
chr7:6162948|6163103 hsa-miR-8078 1 0 0
chr7:6162948|6163103 hsa-miR-323a-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6861-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6089 1 0 0
chr7:6162948|6163103 hsa-miR-6880-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6727-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6748-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6772-5p 1 0 0
chr7:6162948|6163103 hsa-miR-3190-3p 1 0 0
chr7:6162948|6163103 hsa-miR-6786-5p 1 0 0
chr7:6162948|6163103 hsa-miR-1229-5p 1 0 0
chr7:6162948|6163103 hsa-miR-4640-5p 1 0 0
chr7:6162948|6163103 hsa-miR-1228-5p 1 0 0
chr7:6162948|6163103 hsa-miR-4713-3p 1 0 0
chr7:6162948|6163103 hsa-miR-6787-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6752-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6756-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6769a-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6803-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6819-5p 1 0 0
chr7:6162948|6163103 hsa-miR-7110-5p 1 0 0
chr7:6162948|6163103 hsa-miR-10401-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6751-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6779-5p 1 0 0
chr7:6162948|6163103 hsa-miR-3620-5p 1 0 0
chr7:6162948|6163103 hsa-miR-4728-5p 1 0 0
chr7:6162948|6163103 hsa-miR-328-5p 1 0 0
chr7:6162948|6163103 hsa-miR-4632-5p 1 0 0
chr7:6162948|6163103 hsa-miR-4745-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6511b-5p 1 0 0
chr7:6162948|6163103 hsa-miR-3940-5p 1 0 0
chr7:6162948|6163103 hsa-miR-6715b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:6162948|6163103
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MVDMQLWPPVFHENKCCLDPHPDHT
Nucleotide Sequence CTGGTAGATATGCAACTCTGGCCTCCAGTCTTCCATGAAAATAAATGCTGCCTGGACCCCCACCCAGACCACACA
CircID chr7:6162948|6163103
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MLLIPQIGSFSSEKGKSAFLKCLTGRYATLASSLP
Nucleotide Sequence TTGTTACTGATACCTCAAATCGGAAGTTTTAGTTCTGAGAAAGGCAAGTCAGCGTTCTTGAAATGCCTGACTGGTAGATATGCAACTCTGGCCTCCAGTCTTCCATGA
CircID chr7:6162948|6163103
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MEDWRPELHIYQSGISRTLTCLSQN
Nucleotide Sequence ATGGAAGACTGGAGGCCAGAGTTGCATATCTACCAGTCAGGCATTTCAAGAACGCTGACTTGCCTTTCTCAGAACTAA
CircID chr7:6162948|6163103
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MGGGPGSIYFHGRLEARVAYLPVRHFKNADLPFSELKLPI
Nucleotide Sequence CTGGGTGGGGGTCCAGGCAGCATTTATTTTCATGGAAGACTGGAGGCCAGAGTTGCATATCTACCAGTCAGGCATTTCAAGAACGCTGACTTGCCTTTCTCAGAACTAAAACTTCCGATTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab