CircRNA Information

General Information
circRNA Basic Information
CircID chr7:711329|711523
Strand -
CircType exon
Host Gene ENSG00000188191.14;
Algorism CIRI2;DCC;
Sequence GAAGCAGCCACCCTCGCCATGGCCTCCCCGCCCGCCTGCCCCTCGGAGGAGGACGAGAGCCTGAAGGGCTGTGAGCTGTACGTGCAGCTGCACGGGATCCAGCAGGTCCTCAAAGACTGTATCGTCCACCTCTGCATCTCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:711329|711523 hsa-miR-214-5p 0 0 1
chr7:711329|711523 hsa-miR-214-3p 0 0 1
chr7:711329|711523 hsa-miR-558 0 0 1
chr7:711329|711523 hsa-miR-1301-5p 0 0 1
chr7:711329|711523 hsa-miR-1301-3p 0 0 1
chr7:711329|711523 hsa-miR-765 0 1 1
chr7:711329|711523 hsa-miR-338-3p 0 0 1
chr7:711329|711523 hsa-miR-324-3p 0 0 1
chr7:711329|711523 hsa-miR-515-5p 0 0 1
chr7:711329|711523 hsa-miR-346 1 0 0
chr7:711329|711523 hsa-miR-596 1 0 0
chr7:711329|711523 hsa-miR-657 1 0 0
chr7:711329|711523 hsa-miR-548u 0 1 0
chr7:711329|711523 hsa-miR-4512 1 0 0
chr7:711329|711523 hsa-miR-4675 0 1 0
chr7:711329|711523 hsa-miR-5047 0 1 0
chr7:711329|711523 hsa-miR-7974 0 1 0
chr7:711329|711523 hsa-miR-9900 1 1 0
chr7:711329|711523 hsa-miR-6749-3p 1 0 0
chr7:711329|711523 hsa-miR-1247-3p 0 1 0
chr7:711329|711523 hsa-miR-7106-5p 0 1 0
chr7:711329|711523 hsa-miR-3189-5p 0 1 0
chr7:711329|711523 hsa-miR-4655-3p 0 1 0
chr7:711329|711523 hsa-miR-6827-5p 0 1 0
chr7:711329|711523 hsa-miR-4436b-5p 0 1 0
chr7:711329|711523 hsa-miR-4763-5p 1 1 0
chr7:711329|711523 hsa-miR-6763-3p 1 0 0
chr7:711329|711523 hsa-miR-7108-3p 1 1 0
chr7:711329|711523 hsa-miR-1247-5p 1 0 0
chr7:711329|711523 hsa-miR-6803-3p 0 1 0
chr7:711329|711523 hsa-miR-7113-3p 1 1 0
chr7:711329|711523 hsa-miR-4713-3p 0 1 0
chr7:711329|711523 hsa-miR-6878-3p 0 1 0
chr7:711329|711523 hsa-miR-4446-3p 0 1 0
chr7:711329|711523 hsa-miR-6782-3p 0 1 0
chr7:711329|711523 hsa-miR-4632-3p 0 1 0
chr7:711329|711523 hsa-miR-3675-3p 0 1 0
chr7:711329|711523 hsa-miR-4485-5p 0 1 0
chr7:711329|711523 hsa-miR-11181-3p 0 1 0
chr7:711329|711523 hsa-miR-10392-5p 0 1 0
chr7:711329|711523 hsa-miR-10401-3p 1 1 0
chr7:711329|711523 hsa-miR-6744-3p 0 1 0
chr7:711329|711523 hsa-miR-4769-3p 1 0 0
chr7:711329|711523 hsa-miR-7161-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:711329|711523
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MASPPACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEK
Nucleotide Sequence ATGGCCTCCCCGCCCGCCTGCCCCTCGGAGGAGGACGAGAGCCTGAAGGGCTGTGAGCTGTACGTGCAGCTGCACGGGATCCAGCAGGTCCTCAAAGACTGTATCGTCCACCTCTGCATCTCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAAG
CircID chr7:711329|711523
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MGRSGLEMQRWTIQSLRTCWIPCSCTYSSQPFRLSSSSEGQAGGEAMARVAA
Nucleotide Sequence ATGGGGCGTTCGGGCTTGGAGATGCAGAGGTGGACGATACAGTCTTTGAGGACCTGCTGGATCCCGTGCAGCTGCACGTACAGCTCACAGCCCTTCAGGCTCTCGTCCTCCTCCGAGGGGCAGGCGGGCGGGGAGGCCATGGCGAGGGTGGCTGCT
CircID chr7:711329|711523
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence VLPEELHGAFGLGDAEVDDTVFEDLLDPVQLHVQLTALQALVLLRGAGGRGGHGEGGCF
Nucleotide Sequence GTGCTCCCGGAGGAACTTCATGGGGCGTTCGGGCTTGGAGATGCAGAGGTGGACGATACAGTCTTTGAGGACCTGCTGGATCCCGTGCAGCTGCACGTACAGCTCACAGCCCTTCAGGCTCTCGTCCTCCTCCGAGGGGCAGGCGGGCGGGGAGGCCATGGCGAGGGTGGCTGCTTC
CircID chr7:711329|711523
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MLDPVQLHVQLTALQALVLLRGAGGRGGHGEGGCF
Nucleotide Sequence CTGCTGGATCCCGTGCAGCTGCACGTACAGCTCACAGCCCTTCAGGCTCTCGTCCTCCTCCGAGGGGCAGGCGGGCGGGGAGGCCATGGCGAGGGTGGCTGCTTC
CircID chr7:711329|711523
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MASPPACPSEEDESLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEK
Nucleotide Sequence ATGGCCTCCCCGCCCGCCTGCCCCTCGGAGGAGGACGAGAGCCTGAAGGGCTGTGAGCTGTACGTGCAGCTGCACGGGATCCAGCAGGTCCTCAAAGACTGTATCGTCCACCTCTGCATCTCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAAG
CircID chr7:711329|711523
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MYRPPLHLQARTPHEVPPGALREAGE
Nucleotide Sequence CTGTATCGTCCACCTCTGCATCTCCAAGCCCGAACGCCCCATGAAGTTCCTCCGGGAGCACTTCGAGAAGCTGGAGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:711329|711523 U2AF2 2 1 0
chr7:711329|711523 MOV10 1 0 1
chr7:711329|711523 ELAVL1 2 1 0
chr7:711329|711523 SF3B4 2 0 0
chr7:711329|711523 TBRG4 0 1 0
chr7:711329|711523 PRPF8 0 1 0
chr7:711329|711523 UPF1 1 0 0
chr7:711329|711523 TAF15 0 1 0
chr7:711329|711523 NUDT21 0 1 0
chr7:711329|711523 RBM15B 0 2 0
chr7:711329|711523 FUS 2 1 0
chr7:711329|711523 SRSF1 1 0 1
chr7:711329|711523 NOP58 1 0 0
chr7:711329|711523 NOP56 1 0 0
chr7:711329|711523 DDX54 0 0 1
chr7:711329|711523 RBM10 1 1 0
chr7:711329|711523 FIP1L1 0 1 0
chr7:711329|711523 PTBP1 0 2 0
chr7:711329|711523 HNRNPC 2 4 1
chr7:711329|711523 YWHAG 1 1 0
chr7:711329|711523 DDX3X 0 0 2
chr7:711329|711523 LIN28B 1 0 0
chr7:711329|711523 IGF2BP2 0 0 2
chr7:711329|711523 TARDBP 2 1 0
chr7:711329|711523 YTHDC1 2 2 0
chr7:711329|711523 RBFOX2 1 0 0
chr7:711329|711523 SLTM 1 5 0
chr7:711329|711523 CSTF2 0 2 0
chr7:711329|711523 FBL 1 1 1
chr7:711329|711523 EIF4A3 1 3 3
chr7:711329|711523 AGO2 2 2 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab