CircRNA Information

General Information
circRNA Basic Information
CircID chr7:74121833|74122058
Strand -
CircType exon
Host Gene ENSG00000106683.13;
Algorism CIRI2;
Sequence AGGTATCGAGGACTCTCCAAACCCCCAAAGCAGAGAGAGGGCTGATCCCATGGGGCGGAGGTCCCCAGTGGCTGAGCAAACAGCCCCTTCTCTCGCTTTGGGTCTTTTTTTTGTTTCTTTCTTAAAGCCACTTTAGTGAGAAGCAGGTACCAAGCCTCAGGGTGAAGGGGGTCCCTTGAGGGAGCGTGGAGCTGCGGTGCCCTGGCCGGCGATGGGGAGGAGCCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:74121833|74122058 hsa-miR-17-5p 0 0 1
chr7:74121833|74122058 hsa-miR-17-3p 0 0 1
chr7:74121833|74122058 hsa-miR-20a-5p 0 0 1
chr7:74121833|74122058 hsa-miR-20a-3p 0 0 1
chr7:74121833|74122058 hsa-miR-93-5p 0 0 1
chr7:74121833|74122058 hsa-miR-93-3p 0 0 1
chr7:74121833|74122058 hsa-miR-106a-5p 0 0 1
chr7:74121833|74122058 hsa-miR-106a-3p 0 0 1
chr7:74121833|74122058 hsa-miR-185-5p 0 0 1
chr7:74121833|74122058 hsa-miR-185-3p 0 0 1
chr7:74121833|74122058 hsa-miR-106b-5p 0 0 1
chr7:74121833|74122058 hsa-miR-106b-3p 0 0 1
chr7:74121833|74122058 hsa-miR-20b-5p 0 0 1
chr7:74121833|74122058 hsa-miR-20b-3p 0 0 1
chr7:74121833|74122058 hsa-miR-412-5p 0 0 1
chr7:74121833|74122058 hsa-miR-412-3p 0 0 1
chr7:74121833|74122058 hsa-miR-519d-5p 0 0 1
chr7:74121833|74122058 hsa-miR-519d-3p 0 0 1
chr7:74121833|74122058 hsa-miR-620 0 0 1
chr7:74121833|74122058 hsa-miR-638 0 0 1
chr7:74121833|74122058 hsa-miR-1178-5p 0 0 1
chr7:74121833|74122058 hsa-miR-1178-3p 0 0 1
chr7:74121833|74122058 hsa-miR-1229-5p 0 0 1
chr7:74121833|74122058 hsa-miR-1229-3p 0 0 1
chr7:74121833|74122058 hsa-miR-1263 0 0 1
chr7:74121833|74122058 hsa-miR-1270 0 0 1
chr7:74121833|74122058 hsa-miR-1275 0 0 1
chr7:74121833|74122058 hsa-miR-485-5p 0 0 1
chr7:74121833|74122058 hsa-miR-769-3p 0 0 1
chr7:74121833|74122058 hsa-miR-125a-5p 0 1 1
chr7:74121833|74122058 hsa-miR-450b-3p 0 0 1
chr7:74121833|74122058 hsa-miR-125b 0 0 1
chr7:74121833|74122058 hsa-miR-768-5p 0 0 1
chr7:74121833|74122058 hsa-miR-612 1 0 0
chr7:74121833|74122058 hsa-miR-637 1 1 0
chr7:74121833|74122058 hsa-miR-663a 1 0 0
chr7:74121833|74122058 hsa-miR-1538 1 0 0
chr7:74121833|74122058 hsa-miR-544b 0 1 0
chr7:74121833|74122058 hsa-miR-3154 0 1 0
chr7:74121833|74122058 hsa-miR-4268 0 1 0
chr7:74121833|74122058 hsa-miR-4450 1 0 0
chr7:74121833|74122058 hsa-miR-4469 0 1 0
chr7:74121833|74122058 hsa-miR-4475 0 1 0
chr7:74121833|74122058 hsa-miR-4675 0 1 0
chr7:74121833|74122058 hsa-miR-4748 1 0 0
chr7:74121833|74122058 hsa-miR-6069 1 1 0
chr7:74121833|74122058 hsa-miR-8089 1 0 0
chr7:74121833|74122058 hsa-miR-9899 1 1 0
chr7:74121833|74122058 hsa-miR-6749-3p 1 1 0
chr7:74121833|74122058 hsa-miR-6836-3p 1 0 0
chr7:74121833|74122058 hsa-miR-3150a-3p 0 1 0
chr7:74121833|74122058 hsa-miR-3189-5p 0 1 0
chr7:74121833|74122058 hsa-miR-6770-5p 0 1 0
chr7:74121833|74122058 hsa-miR-3667-5p 0 1 0
chr7:74121833|74122058 hsa-miR-6810-5p 1 0 0
chr7:74121833|74122058 hsa-miR-7109-5p 1 0 0
chr7:74121833|74122058 hsa-miR-193b-5p 1 1 0
chr7:74121833|74122058 hsa-miR-6861-3p 0 1 0
chr7:74121833|74122058 hsa-miR-6736-3p 0 1 0
chr7:74121833|74122058 hsa-miR-4640-3p 0 1 0
chr7:74121833|74122058 hsa-miR-4707-5p 1 0 0
chr7:74121833|74122058 hsa-miR-7106-3p 0 1 0
chr7:74121833|74122058 hsa-miR-6741-3p 1 0 0
chr7:74121833|74122058 hsa-miR-6859-3p 0 1 0
chr7:74121833|74122058 hsa-miR-6850-3p 0 1 0
chr7:74121833|74122058 hsa-miR-6752-5p 1 0 0
chr7:74121833|74122058 hsa-miR-6803-5p 1 1 0
chr7:74121833|74122058 hsa-miR-6813-5p 0 1 0
chr7:74121833|74122058 hsa-miR-6842-5p 1 0 0
chr7:74121833|74122058 hsa-miR-7110-5p 1 0 0
chr7:74121833|74122058 hsa-miR-6751-5p 1 1 0
chr7:74121833|74122058 hsa-miR-3127-3p 0 1 0
chr7:74121833|74122058 hsa-miR-939-5p 1 0 0
chr7:74121833|74122058 hsa-miR-6855-5p 1 0 0
chr7:74121833|74122058 hsa-miR-6756-3p 0 1 0
chr7:74121833|74122058 hsa-miR-6805-3p 1 0 0
chr7:74121833|74122058 hsa-miR-6837-5p 0 1 0
chr7:74121833|74122058 hsa-miR-4691-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:74121833|74122058
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MGRRSPVAEQTAPSLALGLFFVSFLKPL
Nucleotide Sequence ATGGGGCGGAGGTCCCCAGTGGCTGAGCAAACAGCCCCTTCTCTCGCTTTGGGTCTTTTTTTTGTTTCTTTCTTAAAGCCACTTTAG
CircID chr7:74121833|74122058
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MIPWGGGPQWLSKQPLLSLWVFFLFLS
Nucleotide Sequence CTGATCCCATGGGGCGGAGGTCCCCAGTGGCTGAGCAAACAGCCCCTTCTCTCGCTTTGGGTCTTTTTTTTGTTTCTTTCTTAA
CircID chr7:74121833|74122058
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MLSHWGPPPHGISPLSALGVWRVLDT
Nucleotide Sequence TTGCTCAGCCACTGGGGACCTCCGCCCCATGGGATCAGCCCTCTCTCTGCTTTGGGGGTTTGGAGAGTCCTCGATACC
CircID chr7:74121833|74122058
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MLLTKVALRKKQKKDPKREKGLFAQPLGTSAPWDQPSLCFGGLESPRY
Nucleotide Sequence CTGCTTCTCACTAAAGTGGCTTTAAGAAAGAAACAAAAAAAAGACCCAAAGCGAGAGAAGGGGCTGTTTGCTCAGCCACTGGGGACCTCCGCCCCATGGGATCAGCCCTCTCTCTGCTTTGGGGGTTTGGAGAGTCCTCGATAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab