CircRNA Information

General Information
circRNA Basic Information
CircID chr7:75050548|75050760
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCGGCTGCTTTAACTGTTTCCCAAGTTCCCCCCTCAGAAGGAAGTCCTTTTCGAAAGAAAGGGCAAAGTGAGAGAAGAGAGGAGTCAGTGAGAAAGCAAGTGGGCATGTAGATGACTGATGCTCACATTATCTGAGCCACACCCACTGCCCGACTCTCTGTTCCTCACACCGGCAGTTTCCAGGCTCAGGAGAAAGCCGGCAAGCCCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:75050548|75050760 hsa-miR-34a-5p 0 0 1
chr7:75050548|75050760 hsa-miR-34a-3p 0 0 1
chr7:75050548|75050760 hsa-miR-345-5p 0 0 1
chr7:75050548|75050760 hsa-miR-345-3p 0 0 1
chr7:75050548|75050760 hsa-miR-449a 0 0 1
chr7:75050548|75050760 hsa-miR-609 0 0 1
chr7:75050548|75050760 hsa-miR-617 0 0 1
chr7:75050548|75050760 hsa-miR-625-5p 0 0 1
chr7:75050548|75050760 hsa-miR-625-3p 0 0 1
chr7:75050548|75050760 hsa-miR-449b-5p 0 0 1
chr7:75050548|75050760 hsa-miR-449b-3p 0 0 1
chr7:75050548|75050760 hsa-miR-874-5p 0 0 1
chr7:75050548|75050760 hsa-miR-874-3p 0 0 1
chr7:75050548|75050760 hsa-miR-541-5p 0 0 1
chr7:75050548|75050760 hsa-miR-541-3p 0 0 1
chr7:75050548|75050760 hsa-miR-938 0 0 1
chr7:75050548|75050760 hsa-miR-942-5p 0 0 1
chr7:75050548|75050760 hsa-miR-942-3p 0 0 1
chr7:75050548|75050760 hsa-miR-1229-5p 0 0 1
chr7:75050548|75050760 hsa-miR-1229-3p 0 0 1
chr7:75050548|75050760 hsa-miR-1236-5p 0 0 1
chr7:75050548|75050760 hsa-miR-1236-3p 0 0 1
chr7:75050548|75050760 hsa-miR-1237-5p 0 0 1
chr7:75050548|75050760 hsa-miR-1237-3p 0 0 1
chr7:75050548|75050760 hsa-miR-1200 0 0 1
chr7:75050548|75050760 hsa-miR-1294 0 0 1
chr7:75050548|75050760 hsa-miR-1248 0 0 1
chr7:75050548|75050760 hsa-miR-423-5p 0 0 1
chr7:75050548|75050760 hsa-miR-654-5p 0 0 1
chr7:75050548|75050760 hsa-miR-875-3p 0 0 1
chr7:75050548|75050760 hsa-miR-34c-5p 0 0 1
chr7:75050548|75050760 hsa-miR-644 0 0 1
chr7:75050548|75050760 hsa-miR-1254 0 0 1
chr7:75050548|75050760 hsa-miR-24 0 0 1
chr7:75050548|75050760 hsa-miR-663a 1 0 0
chr7:75050548|75050760 hsa-miR-1183 1 0 0
chr7:75050548|75050760 hsa-miR-2861 1 0 0
chr7:75050548|75050760 hsa-miR-3147 1 0 0
chr7:75050548|75050760 hsa-miR-4651 1 0 0
chr7:75050548|75050760 hsa-miR-4692 1 0 0
chr7:75050548|75050760 hsa-miR-6860 1 0 0
chr7:75050548|75050760 hsa-miR-12119 1 0 0
chr7:75050548|75050760 hsa-miR-92a-2-5p 1 0 0
chr7:75050548|75050760 hsa-miR-27a-5p 1 0 0
chr7:75050548|75050760 hsa-miR-185-3p 1 0 0
chr7:75050548|75050760 hsa-miR-6786-5p 1 0 0
chr7:75050548|75050760 hsa-miR-5187-3p 1 0 0
chr7:75050548|75050760 hsa-miR-4640-5p 1 0 0
chr7:75050548|75050760 hsa-miR-885-3p 1 0 0
chr7:75050548|75050760 hsa-miR-6825-3p 1 0 0
chr7:75050548|75050760 hsa-miR-4750-5p 1 0 0
chr7:75050548|75050760 hsa-miR-10400-5p 1 0 0
chr7:75050548|75050760 hsa-miR-4763-3p 1 0 0
chr7:75050548|75050760 hsa-miR-6756-5p 1 0 0
chr7:75050548|75050760 hsa-miR-10396b-5p 1 0 0
chr7:75050548|75050760 hsa-miR-3187-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:75050548|75050760
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MFPKFPPQKEVLFERKGKVREERSQ
Nucleotide Sequence CTGTTTCCCAAGTTCCCCCCTCAGAAGGAAGTCCTTTTCGAAAGAAAGGGCAAAGTGAGAGAAGAGAGGAGTCAGTGA
CircID chr7:75050548|75050760
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MMLTLSEPHPLPDSLFLTPAVSRLRRKPASPT
Nucleotide Sequence CTGATGCTCACATTATCTGAGCCACACCCACTGCCCGACTCTCTGTTCCTCACACCGGCAGTTTCCAGGCTCAGGAGAAAGCCGGCAAGCCCCACC
CircID chr7:75050548|75050760
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MSHTHCPTLCSSHRQFPGSGESRQAPP
Nucleotide Sequence CTGAGCCACACCCACTGCCCGACTCTCTGTTCCTCACACCGGCAGTTTCCAGGCTCAGGAGAAAGCCGGCAAGCCCCACCA
CircID chr7:75050548|75050760
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MSLETAGVRNRESGSGCGSDNVSISHLHAHLLSH
Nucleotide Sequence CTGAGCCTGGAAACTGCCGGTGTGAGGAACAGAGAGTCGGGCAGTGGGTGTGGCTCAGATAATGTGAGCATCAGTCATCTACATGCCCACTTGCTTTCTCACTGA
CircID chr7:75050548|75050760
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MPTCFLTDSSLLSLCPFFRKGLPSEGGTWETVKAA
Nucleotide Sequence ATGCCCACTTGCTTTCTCACTGACTCCTCTCTTCTCTCACTTTGCCCTTTCTTTCGAAAAGGACTTCCTTCTGAGGGGGGAACTTGGGAAACAGTTAAAGCAGCC
CircID chr7:75050548|75050760
ORF Type ORF6
Protein Length 29
Nucleotide Length 87
Protein Sequence MTPLFSHFALSFEKDFLLRGELGKQLKQP
Nucleotide Sequence CTGACTCCTCTCTTCTCTCACTTTGCCCTTTCTTTCGAAAAGGACTTCCTTCTGAGGGGGGAACTTGGGAAACAGTTAAAGCAGCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab