CircRNA Information

General Information
circRNA Basic Information
CircID chr7:754589|756994
Strand +
CircType exon
Host Gene ENSG00000164818.15;
Algorism CIRI2;DCC;find_circ;
Sequence AGCGCCGCCCTGTGCTGGGCTGCCGGGAGCTCGTCTTCAGGAACCTCTCCAAGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTGGTGGGGACCCGAGTGAAGTCGGCACAGCTGCTCCCAGTGCTGCTGCTGCATGCCGAGGACCACGCCACGCAGCACCTGGAGGTCGTCCTCCGGACCCTGTTCCAGGCCTGCACCGACGAGGAGGCAGCCGTGGTCCAAAGTTGTACCAGATCCGCAGAGCTCGTCGGGACGTTTGTCAGCCCTGAGGTGTTTCTGAAGCTGATCTTATCGACGCTGAAGAAGACGCCCTCTGCCTCCGGCCTCCTGGTGCTGGCCTCCGCCATGCGGGGTTGCCCCCGAGAAGCCCTCCAGCCGCACCTGGCAGCCATCGCCACAGAGCTGGCACAGGCCCACATCTGCCAGGCATCTGAAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:754589|756994 hsa-miR-1182 1 1 1
chr7:754589|756994 hsa-miR-2861 1 1 1
chr7:754589|756994 hsa-miR-4734 1 1 1
chr7:754589|756994 hsa-miR-4739 1 1 1
chr7:754589|756994 hsa-miR-6081 1 1 1
chr7:754589|756994 hsa-miR-7150 1 1 1
chr7:754589|756994 hsa-miR-150-3p 1 1 1
chr7:754589|756994 hsa-miR-7106-5p 1 1 1
chr7:754589|756994 hsa-miR-6894-5p 1 1 1
chr7:754589|756994 hsa-miR-125a-3p 1 1 1
chr7:754589|756994 hsa-miR-6089 1 1 1
chr7:754589|756994 hsa-miR-1301-3p 1 1 1
chr7:754589|756994 hsa-miR-4459 1 1 1
chr7:754589|756994 hsa-miR-6727-5p 1 1 1
chr7:754589|756994 hsa-miR-6842-3p 1 1 1
chr7:754589|756994 hsa-miR-6721-5p 1 1 1
chr7:754589|756994 hsa-miR-432-5p 1 1 1
chr7:754589|756994 hsa-miR-7108-5p 1 1 1
chr7:754589|756994 hsa-miR-6827-5p 1 1 1
chr7:754589|756994 hsa-miR-3194-5p 1 1 1
chr7:754589|756994 hsa-miR-4787-5p 1 1 1
chr7:754589|756994 hsa-miR-4446-3p 1 1 1
chr7:754589|756994 hsa-miR-1306-5p 1 1 1
chr7:754589|756994 hsa-miR-3065-3p 1 1 1
chr7:754589|756994 hsa-miR-3158-3p 1 1 1
chr7:754589|756994 hsa-miR-3670 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:754589|756994
ORF Type ORF1
Protein Length 142
Nucleotide Length 426
Protein Sequence MWACASSVAMAARCGWRASRGQPRMAEASTRRPEAEGVFFSVDKISFRNTSGLTNVPTSSADLVQLWTTAASSSVQAWNRVRRTTSRCCVAWSSACSSSTGSSCADFTRVPTTQSVMSWHRAGRILERFLKTSSRQPSTGRR
Nucleotide Sequence ATGTGGGCCTGTGCCAGCTCTGTGGCGATGGCTGCCAGGTGCGGCTGGAGGGCTTCTCGGGGGCAACCCCGCATGGCGGAGGCCAGCACCAGGAGGCCGGAGGCAGAGGGCGTCTTCTTCAGCGTCGATAAGATCAGCTTCAGAAACACCTCAGGGCTGACAAACGTCCCGACGAGCTCTGCGGATCTGGTACAACTTTGGACCACGGCTGCCTCCTCGTCGGTGCAGGCCTGGAACAGGGTCCGGAGGACGACCTCCAGGTGCTGCGTGGCGTGGTCCTCGGCATGCAGCAGCAGCACTGGGAGCAGCTGTGCCGACTTCACTCGGGTCCCCACCACCCAGTCGGTGATGTCGTGGCACAGGGCAGGGAGGATCTTGGAGAGGTTCCTGAAGACGAGCTCCCGGCAGCCCAGCACAGGGCGGCGC
CircID chr7:754589|756994
ORF Type ORF2
Protein Length 145
Nucleotide Length 435
Protein Sequence VLGCRELVFRNLSKILPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSCTRSAELVGTFVSPEVFLKLILSTLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELAQAHICQASEN
Nucleotide Sequence GTGCTGGGCTGCCGGGAGCTCGTCTTCAGGAACCTCTCCAAGATCCTCCCTGCCCTGTGCCACGACATCACCGACTGGGTGGTGGGGACCCGAGTGAAGTCGGCACAGCTGCTCCCAGTGCTGCTGCTGCATGCCGAGGACCACGCCACGCAGCACCTGGAGGTCGTCCTCCGGACCCTGTTCCAGGCCTGCACCGACGAGGAGGCAGCCGTGGTCCAAAGTTGTACCAGATCCGCAGAGCTCGTCGGGACGTTTGTCAGCCCTGAGGTGTTTCTGAAGCTGATCTTATCGACGCTGAAGAAGACGCCCTCTGCCTCCGGCCTCCTGGTGCTGGCCTCCGCCATGCGGGGTTGCCCCCGAGAAGCCCTCCAGCCGCACCTGGCAGCCATCGCCACAGAGCTGGCACAGGCCCACATCTGCCAGGCATCTGAAAAC
CircID chr7:754589|756994
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MPGRCGPVPALWRWLPGAAGGLLGGNPAWRRPAPGGRRQRASSSASIRSASETPQG*
Nucleotide Sequence ATGCCTGGCAGATGTGGGCCTGTGCCAGCTCTGTGGCGATGGCTGCCAGGTGCGGCTGGAGGGCTTCTCGGGGGCAACCCCGCATGGCGGAGGCCAGCACCAGGAGGCCGGAGGCAGAGGGCGTCTTCTTCAGCGTCGATAAGATCAGCTTCAGAAACACCTCAGGGCTGA
CircID chr7:754589|756994
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MPRTTPRSTWRSSSGPCSRPAPTRRQPWSKVVPDPQSSSGRLSALRCF*
Nucleotide Sequence ATGCCGAGGACCACGCCACGCAGCACCTGGAGGTCGTCCTCCGGACCCTGTTCCAGGCCTGCACCGACGAGGAGGCAGCCGTGGTCCAAAGTTGTACCAGATCCGCAGAGCTCGTCGGGACGTTTGTCAGCCCTGAGGTGTTTCTGA
CircID chr7:754589|756994
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MQQQHWEQLCRLHSGPHHPVGDVVAQGREDLGEVPEDELPAAQHRAA
Nucleotide Sequence ATGCAGCAGCAGCACTGGGAGCAGCTGTGCCGACTTCACTCGGGTCCCCACCACCCAGTCGGTGATGTCGTGGCACAGGGCAGGGAGGATCTTGGAGAGGTTCCTGAAGACGAGCTCCCGGCAGCCCAGCACAGGGCGGCG
CircID chr7:754589|756994
ORF Type ORF6
Protein Length 70
Nucleotide Length 210
Protein Sequence VPRHHRLGGGDPSEVGTAAPSAAAACRGPRHAAPGGRPPDPVPGLHRRGGSRGPKLYQIRRARRDVCQP*
Nucleotide Sequence GTGCCACGACATCACCGACTGGGTGGTGGGGACCCGAGTGAAGTCGGCACAGCTGCTCCCAGTGCTGCTGCTGCATGCCGAGGACCACGCCACGCAGCACCTGGAGGTCGTCCTCCGGACCCTGTTCCAGGCCTGCACCGACGAGGAGGCAGCCGTGGTCCAAAGTTGTACCAGATCCGCAGAGCTCGTCGGGACGTTTGTCAGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:754589|756994 NOP56 1 0 0
chr7:754589|756994 MOV10 0 0 1
chr7:754589|756994 ELAVL1 0 0 1
chr7:754589|756994 SF3B4 1 0 0
chr7:754589|756994 PRPF8 0 2 0
chr7:754589|756994 UPF1 0 1 0
chr7:754589|756994 TAF15 0 1 0
chr7:754589|756994 FMR1 2 0 16
chr7:754589|756994 FUS 0 1 0
chr7:754589|756994 DGCR8 0 1 0
chr7:754589|756994 SRSF7 0 0 1
chr7:754589|756994 NOP58 1 1 2
chr7:754589|756994 U2AF1 4 0 3
chr7:754589|756994 U2AF2 11 2 5
chr7:754589|756994 DDX54 0 0 8
chr7:754589|756994 RBM10 7 11 0
chr7:754589|756994 PCBP2 1 0 0
chr7:754589|756994 FIP1L1 0 2 0
chr7:754589|756994 MBNL2 2 0 0
chr7:754589|756994 HNRNPC 14 6 2
chr7:754589|756994 TRA2A 0 0 1
chr7:754589|756994 SMNDC1 0 1 0
chr7:754589|756994 MSI2 1 0 2
chr7:754589|756994 LIN28B 0 1 3
chr7:754589|756994 FXR1 1 0 2
chr7:754589|756994 FXR2 2 0 4
chr7:754589|756994 SND1 1 0 0
chr7:754589|756994 IGF2BP3 1 0 2
chr7:754589|756994 IGF2BP2 0 0 2
chr7:754589|756994 PTBP1 1 1 0
chr7:754589|756994 TARDBP 1 0 0
chr7:754589|756994 YTHDC1 0 0 1
chr7:754589|756994 DICER1 0 0 1
chr7:754589|756994 RBFOX2 1 0 0
chr7:754589|756994 CSTF2T 0 1 1
chr7:754589|756994 CSTF2 0 1 0
chr7:754589|756994 CPSF7 0 1 0
chr7:754589|756994 DKC1 0 1 0
chr7:754589|756994 HNRNPK 0 1 0
chr7:754589|756994 FBL 2 2 4
chr7:754589|756994 AGO1 0 0 1
chr7:754589|756994 EWSR1 0 0 1
chr7:754589|756994 EIF4A3 1 3 4
chr7:754589|756994 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab