CircRNA Information

General Information
circRNA Basic Information
CircID chr7:94405199|94406303
Strand +
CircType exon
Host Gene ENSG00000164692.16;
Algorism CIRI2;
Sequence CTTCACACCAGGAGCACCGGGCTGTCCCTTCAATCCATCCAGACCATTGTGTCCCCTAATGCCTTTGAAGCCAGGAAGTCCAGGAGTTCCAGGGAAACCACGAGCACCCTGTGGTCCAACAACTCCTCTCTCACCAGGTCGTCCGGGTTTTCCAGGGTGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:94405199|94406303 hsa-miR-422a 0 1 1
chr7:94405199|94406303 hsa-miR-617 0 1 1
chr7:94405199|94406303 hsa-miR-631 0 0 1
chr7:94405199|94406303 hsa-miR-1246 0 0 1
chr7:94405199|94406303 hsa-miR-1250-5p 0 0 1
chr7:94405199|94406303 hsa-miR-1250-3p 0 0 1
chr7:94405199|94406303 hsa-miR-875-3p 0 0 1
chr7:94405199|94406303 hsa-miR-140-3p 0 1 1
chr7:94405199|94406303 hsa-miR-1274a 0 0 1
chr7:94405199|94406303 hsa-miR-220c 0 0 1
chr7:94405199|94406303 hsa-miR-378 0 0 1
chr7:94405199|94406303 hsa-miR-768-3p 0 0 1
chr7:94405199|94406303 hsa-miR-1538 0 1 0
chr7:94405199|94406303 hsa-miR-378b 0 1 0
chr7:94405199|94406303 hsa-miR-378c 0 1 0
chr7:94405199|94406303 hsa-miR-4299 0 1 0
chr7:94405199|94406303 hsa-miR-4308 0 1 0
chr7:94405199|94406303 hsa-miR-3907 0 1 0
chr7:94405199|94406303 hsa-miR-378h 0 1 0
chr7:94405199|94406303 hsa-miR-4739 1 0 0
chr7:94405199|94406303 hsa-miR-6133 1 1 0
chr7:94405199|94406303 hsa-miR-7515 0 1 0
chr7:94405199|94406303 hsa-miR-8085 1 0 0
chr7:94405199|94406303 hsa-miR-6734-5p 1 0 0
chr7:94405199|94406303 hsa-miR-671-5p 1 0 0
chr7:94405199|94406303 hsa-miR-7106-5p 1 0 0
chr7:94405199|94406303 hsa-miR-7851-3p 1 0 0
chr7:94405199|94406303 hsa-miR-6741-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6783-5p 1 0 0
chr7:94405199|94406303 hsa-miR-3663-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6805-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6782-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6810-5p 1 0 0
chr7:94405199|94406303 hsa-miR-7109-5p 1 0 0
chr7:94405199|94406303 hsa-miR-877-5p 1 0 0
chr7:94405199|94406303 hsa-miR-4446-5p 0 1 0
chr7:94405199|94406303 hsa-miR-149-3p 1 0 0
chr7:94405199|94406303 hsa-miR-6824-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6789-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6800-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6864-5p 0 1 0
chr7:94405199|94406303 hsa-miR-216a-3p 1 1 0
chr7:94405199|94406303 hsa-miR-6856-3p 0 1 0
chr7:94405199|94406303 hsa-miR-3620-3p 0 1 0
chr7:94405199|94406303 hsa-miR-6769b-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6778-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6865-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6870-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6752-5p 1 0 0
chr7:94405199|94406303 hsa-miR-7107-5p 1 1 0
chr7:94405199|94406303 hsa-miR-1249-5p 1 0 0
chr7:94405199|94406303 hsa-miR-4649-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6738-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6794-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6795-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6887-5p 1 0 0
chr7:94405199|94406303 hsa-miR-30c-1-3p 1 1 0
chr7:94405199|94406303 hsa-miR-6731-5p 1 0 0
chr7:94405199|94406303 hsa-miR-6856-5p 1 1 0
chr7:94405199|94406303 hsa-miR-4665-5p 1 0 0
chr7:94405199|94406303 hsa-miR-378a-3p 0 1 0
chr7:94405199|94406303 hsa-miR-6750-5p 1 0 0
chr7:94405199|94406303 hsa-miR-5009-5p 0 1 0
chr7:94405199|94406303 hsa-miR-378d 0 1 0
chr7:94405199|94406303 hsa-miR-6839-5p 0 1 0
chr7:94405199|94406303 hsa-miR-4782-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr7:94405199|94406303
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MSLQSIQTIVSPNAFEARKSRSSRETTSTLWSNNSSLTRSSGFSRVT
Nucleotide Sequence CTGTCCCTTCAATCCATCCAGACCATTGTGTCCCCTAATGCCTTTGAAGCCAGGAAGTCCAGGAGTTCCAGGGAAACCACGAGCACCCTGTGGTCCAACAACTCCTCTCTCACCAGGTCGTCCGGGTTTTCCAGGGTGACC

CircID chr7:94405199|94406303
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MCPLMPLKPGSPGVPGKPRAPCGPTTPLSPGRPGFPG
Nucleotide Sequence TTGTGTCCCCTAATGCCTTTGAAGCCAGGAAGTCCAGGAGTTCCAGGGAAACCACGAGCACCCTGTGGTCCAACAACTCCTCTCTCACCAGGTCGTCCGGGTTTTCCAGGGTGA

CircID chr7:94405199|94406303
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MENPDDLVREELLDHRVLVVSLELLDFLASKALGDTMVWMD
Nucleotide Sequence CTGGAAAACCCGGACGACCTGGTGAGAGAGGAGTTGTTGGACCACAGGGTGCTCGTGGTTTCCCTGGAACTCCTGGACTTCCTGGCTTCAAAGGCATTAGGGGACACAATGGTCTGGATGGATTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites