CircRNA Information

General Information
circRNA Basic Information
CircID chr7:94424409|94425849
Strand +
CircType exon
Host Gene ENSG00000164692.16;
Algorism CIRI2;
Sequence CACGGTTTCCATGTTTGCCAGCAGGACCCACGGGGCCATGAGGACCAGGTGCACCTGCAGCACCAACGGGACCAATATTGCCAGGGTAACCGCGCTCTCCCTTGTGTCCGGGTTGACCATCGCGACCTGGGGGACCATCGTTCCCAGGGTTGCCATCACGACCAGCTTCACCAGGAGCACCGTTGACTCCAGGACTACCCACAGCACCAGGAGGACCACGGGCCCCAGGAGGGCCGGCAATGCCAAGAGGACCAGGTTCACCCACAGCACCAGCAACACCTGGTAGACCACGTTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:94424409|94425849 hsa-miR-95-5p 0 0 1
chr7:94424409|94425849 hsa-miR-95-3p 0 0 1
chr7:94424409|94425849 hsa-miR-10a-5p 0 0 1
chr7:94424409|94425849 hsa-miR-10a-3p 0 0 1
chr7:94424409|94425849 hsa-miR-10b-5p 0 0 1
chr7:94424409|94425849 hsa-miR-10b-3p 0 0 1
chr7:94424409|94425849 hsa-miR-370-5p 0 0 1
chr7:94424409|94425849 hsa-miR-370-3p 0 0 1
chr7:94424409|94425849 hsa-miR-133b 0 0 1
chr7:94424409|94425849 hsa-miR-601 0 0 1
chr7:94424409|94425849 hsa-miR-657 0 0 1
chr7:94424409|94425849 hsa-miR-1205 0 0 1
chr7:94424409|94425849 hsa-miR-1250-5p 0 0 1
chr7:94424409|94425849 hsa-miR-1250-3p 0 0 1
chr7:94424409|94425849 hsa-miR-1256 0 0 1
chr7:94424409|94425849 hsa-miR-1262 0 1 1
chr7:94424409|94425849 hsa-miR-1292-5p 0 0 1
chr7:94424409|94425849 hsa-miR-1292-3p 0 0 1
chr7:94424409|94425849 hsa-miR-127-5p 0 0 1
chr7:94424409|94425849 hsa-miR-490-3p 0 0 1
chr7:94424409|94425849 hsa-miR-1289 0 0 1
chr7:94424409|94425849 hsa-miR-361-3p 0 1 1
chr7:94424409|94425849 hsa-miR-409-5p 0 1 1
chr7:94424409|94425849 hsa-miR-138 0 0 1
chr7:94424409|94425849 hsa-miR-133a 0 0 1
chr7:94424409|94425849 hsa-miR-608 1 0 0
chr7:94424409|94425849 hsa-miR-764 0 1 0
chr7:94424409|94425849 hsa-miR-1183 1 0 0
chr7:94424409|94425849 hsa-miR-1293 1 0 0
chr7:94424409|94425849 hsa-miR-3907 1 1 0
chr7:94424409|94425849 hsa-miR-3909 1 1 0
chr7:94424409|94425849 hsa-miR-4440 1 0 0
chr7:94424409|94425849 hsa-miR-4442 0 1 0
chr7:94424409|94425849 hsa-miR-4470 0 1 0
chr7:94424409|94425849 hsa-miR-4479 1 0 0
chr7:94424409|94425849 hsa-miR-4488 1 0 0
chr7:94424409|94425849 hsa-miR-4642 1 0 0
chr7:94424409|94425849 hsa-miR-4739 1 0 0
chr7:94424409|94425849 hsa-miR-4767 1 0 0
chr7:94424409|94425849 hsa-miR-5681b 0 1 0
chr7:94424409|94425849 hsa-miR-5698 1 0 0
chr7:94424409|94425849 hsa-miR-6131 0 1 0
chr7:94424409|94425849 hsa-miR-8073 1 0 0
chr7:94424409|94425849 hsa-miR-12115 1 0 0
chr7:94424409|94425849 hsa-miR-138-5p 1 1 0
chr7:94424409|94425849 hsa-miR-134-3p 0 1 0
chr7:94424409|94425849 hsa-miR-4726-3p 0 1 0
chr7:94424409|94425849 hsa-miR-133a-5p 1 1 0
chr7:94424409|94425849 hsa-miR-6861-5p 1 0 0
chr7:94424409|94425849 hsa-miR-3692-5p 1 1 0
chr7:94424409|94425849 hsa-miR-4653-3p 0 1 0
chr7:94424409|94425849 hsa-miR-6741-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6759-5p 0 1 0
chr7:94424409|94425849 hsa-miR-874-3p 1 0 0
chr7:94424409|94425849 hsa-miR-6776-5p 1 0 0
chr7:94424409|94425849 hsa-miR-3663-5p 0 1 0
chr7:94424409|94425849 hsa-miR-6748-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6793-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6796-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6868-3p 0 1 0
chr7:94424409|94425849 hsa-miR-6760-5p 0 1 0
chr7:94424409|94425849 hsa-miR-6821-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6735-3p 1 1 0
chr7:94424409|94425849 hsa-miR-1343-3p 1 1 0
chr7:94424409|94425849 hsa-miR-6852-5p 0 1 0
chr7:94424409|94425849 hsa-miR-1229-5p 0 1 0
chr7:94424409|94425849 hsa-miR-485-5p 0 1 0
chr7:94424409|94425849 hsa-miR-149-3p 1 0 0
chr7:94424409|94425849 hsa-miR-7152-3p 0 1 0
chr7:94424409|94425849 hsa-miR-660-3p 1 1 0
chr7:94424409|94425849 hsa-miR-6804-3p 0 1 0
chr7:94424409|94425849 hsa-miR-381-5p 1 0 0
chr7:94424409|94425849 hsa-miR-4746-3p 1 0 0
chr7:94424409|94425849 hsa-miR-2277-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6789-3p 1 0 0
chr7:94424409|94425849 hsa-miR-500a-3p 0 1 0
chr7:94424409|94425849 hsa-miR-431-5p 0 1 0
chr7:94424409|94425849 hsa-miR-133a-3p 0 1 0
chr7:94424409|94425849 hsa-miR-1343-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6883-5p 1 0 0
chr7:94424409|94425849 hsa-miR-939-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6731-5p 1 1 0
chr7:94424409|94425849 hsa-miR-6785-5p 1 0 0
chr7:94424409|94425849 hsa-miR-6724-5p 1 0 0
chr7:94424409|94425849 hsa-miR-18b-5p 0 1 0
chr7:94424409|94425849 hsa-miR-9851-5p 0 1 0
chr7:94424409|94425849 hsa-miR-4756-5p 1 0 0
chr7:94424409|94425849 hsa-miR-10394-5p 0 1 0
chr7:94424409|94425849 hsa-miR-323b-5p 1 0 0
chr7:94424409|94425849 hsa-miR-195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:94424409|94425849
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MQHQRDQYCQGNRALPCVRVDHRDLGDHRSQGCHHDQLHQEHR
Nucleotide Sequence CTGCAGCACCAACGGGACCAATATTGCCAGGGTAACCGCGCTCTCCCTTGTGTCCGGGTTGACCATCGCGACCTGGGGGACCATCGTTCCCAGGGTTGCCATCACGACCAGCTTCACCAGGAGCACCGTTGA
CircID chr7:94424409|94425849
ORF Type ORF2
Protein Length 91
Nucleotide Length 276
Protein Sequence MFASRTHGAMRTRCTCSTNGTNIARVTALSLVSGLTIATWGTIVPRVAITTSFTRSTVDSRTTHSTRRTTGPRRAGNAKRTRFTHSTSNTW
Nucleotide Sequence ATGTTTGCCAGCAGGACCCACGGGGCCATGAGGACCAGGTGCACCTGCAGCACCAACGGGACCAATATTGCCAGGGTAACCGCGCTCTCCCTTGTGTCCGGGTTGACCATCGCGACCTGGGGGACCATCGTTCCCAGGGTTGCCATCACGACCAGCTTCACCAGGAGCACCGTTGACTCCAGGACTACCCACAGCACCAGGAGGACCACGGGCCCCAGGAGGGCCGGCAATGCCAAGAGGACCAGGTTCACCCACAGCACCAGCAACACCTGGTAG
CircID chr7:94424409|94425849
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MPSRPASPGAPLTPGLPTAPGGPRAPGGPAMPRGPGSPTAPATPGRPRS
Nucleotide Sequence TTGCCATCACGACCAGCTTCACCAGGAGCACCGTTGACTCCAGGACTACCCACAGCACCAGGAGGACCACGGGCCCCAGGAGGGCCGGCAATGCCAAGAGGACCAGGTTCACCCACAGCACCAGCAACACCTGGTAGACCACGTTCA
CircID chr7:94424409|94425849
ORF Type ORF4
Protein Length 92
Nucleotide Length 276
Protein Sequence MLVLWVNLVLLALPALLGPVVLLVLWVVLESTVLLVKLVVMATLGTMVPQVAMVNPDTRESAVTLAILVPLVLQVHLVLMAPWVLLANMETV
Nucleotide Sequence TTGCTGGTGCTGTGGGTGAACCTGGTCCTCTTGGCATTGCCGGCCCTCCTGGGGCCCGTGGTCCTCCTGGTGCTGTGGGTAGTCCTGGAGTCAACGGTGCTCCTGGTGAAGCTGGTCGTGATGGCAACCCTGGGAACGATGGTCCCCCAGGTCGCGATGGTCAACCCGGACACAAGGGAGAGCGCGGTTACCCTGGCAATATTGGTCCCGTTGGTGCTGCAGGTGCACCTGGTCCTCATGGCCCCGTGGGTCCTGCTGGCAAACATGGAAACCGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab