CircRNA Information

General Information
circRNA Basic Information
CircID chr7:99619822|99619993
Strand +
CircType exon
Host Gene ENSG00000197037.9;
Algorism CIRI2;
Sequence CGCCTTGGCCTCCAGTGCTCTTTCTGTCAGGTCCTCCACCATGGCGGCCAGGGCCTTGCCACTCTCTGGGCCATGCTCCCGGATCCAGGCGTAGAACTCGCGGGGCAGGATAGTGAGGAACTGCTCCAGCACCAGCAGCTCCAGGATCTGCTCCTTGGTGTGCAACTCGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:99619822|99619993 hsa-miR-31-5p 0 0 1
chr7:99619822|99619993 hsa-miR-31-3p 0 0 1
chr7:99619822|99619993 hsa-miR-492 0 0 1
chr7:99619822|99619993 hsa-miR-558 0 0 1
chr7:99619822|99619993 hsa-miR-650 0 0 1
chr7:99619822|99619993 hsa-miR-765 0 0 1
chr7:99619822|99619993 hsa-miR-1287-5p 0 0 1
chr7:99619822|99619993 hsa-miR-1287-3p 0 0 1
chr7:99619822|99619993 hsa-miR-1291 0 0 1
chr7:99619822|99619993 hsa-miR-1276 0 0 1
chr7:99619822|99619993 hsa-miR-324-3p 0 0 1
chr7:99619822|99619993 hsa-miR-138 0 0 1
chr7:99619822|99619993 hsa-miR-1254 0 0 1
chr7:99619822|99619993 hsa-miR-661 1 0 0
chr7:99619822|99619993 hsa-miR-940 1 0 0
chr7:99619822|99619993 hsa-miR-2861 1 0 0
chr7:99619822|99619993 hsa-miR-4253 1 0 0
chr7:99619822|99619993 hsa-miR-3911 1 0 0
chr7:99619822|99619993 hsa-miR-4466 1 0 0
chr7:99619822|99619993 hsa-miR-4669 1 0 0
chr7:99619822|99619993 hsa-miR-4682 1 0 0
chr7:99619822|99619993 hsa-miR-5192 1 0 0
chr7:99619822|99619993 hsa-miR-6081 1 0 0
chr7:99619822|99619993 hsa-miR-6090 1 0 0
chr7:99619822|99619993 hsa-miR-8064 1 0 0
chr7:99619822|99619993 hsa-miR-12114 1 0 0
chr7:99619822|99619993 hsa-miR-138-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6749-3p 1 0 0
chr7:99619822|99619993 hsa-miR-6894-5p 1 0 0
chr7:99619822|99619993 hsa-miR-8071 1 0 0
chr7:99619822|99619993 hsa-miR-6880-5p 1 0 0
chr7:99619822|99619993 hsa-miR-7847-3p 1 0 0
chr7:99619822|99619993 hsa-miR-6746-5p 1 0 0
chr7:99619822|99619993 hsa-miR-127-3p 1 0 0
chr7:99619822|99619993 hsa-miR-6827-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6786-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6771-5p 1 0 0
chr7:99619822|99619993 hsa-miR-654-5p 1 0 0
chr7:99619822|99619993 hsa-miR-4763-3p 1 0 0
chr7:99619822|99619993 hsa-miR-6769b-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6787-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6775-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6726-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6754-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6756-5p 1 0 0
chr7:99619822|99619993 hsa-miR-11181-3p 1 0 0
chr7:99619822|99619993 hsa-miR-6875-5p 1 0 0
chr7:99619822|99619993 hsa-miR-7111-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6836-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6862-5p 1 0 0
chr7:99619822|99619993 hsa-miR-328-5p 1 0 0
chr7:99619822|99619993 hsa-miR-4726-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6794-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6795-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6887-5p 1 0 0
chr7:99619822|99619993 hsa-miR-4723-5p 1 0 0
chr7:99619822|99619993 hsa-miR-939-5p 1 0 0
chr7:99619822|99619993 hsa-miR-4665-5p 1 0 0
chr7:99619822|99619993 hsa-miR-3679-5p 1 0 0
chr7:99619822|99619993 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:99619822|99619993
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MLPDPGVELAGQDSEELLQHQQLQDLLLGVQLG
Nucleotide Sequence ATGCTCCCGGATCCAGGCGTAGAACTCGCGGGGCAGGATAGTGAGGAACTGCTCCAGCACCAGCAGCTCCAGGATCTGCTCCTTGGTGTGCAACTCGGG
CircID chr7:99619822|99619993
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MASSALSVRSSTMAARALPLSGPCSRIQA
Nucleotide Sequence TTGGCCTCCAGTGCTCTTTCTGTCAGGTCCTCCACCATGGCGGCCAGGGCCTTGCCACTCTCTGGGCCATGCTCCCGGATCCAGGCGTAG
CircID chr7:99619822|99619993
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MSGPPPWRPGPCHSLGHAPGSRRRTRGAG
Nucleotide Sequence CTGTCAGGTCCTCCACCATGGCGGCCAGGGCCTTGCCACTCTCTGGGCCATGCTCCCGGATCCAGGCGTAGAACTCGCGGGGCAGGATAG
CircID chr7:99619822|99619993
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MDPGAWPREWQGPGRHGGGPDRKSTGGQG
Nucleotide Sequence CTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGC
CircID chr7:99619822|99619993
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MHTKEQILELLVLEQFLTILPREFYAWIREHGPESGKALAAMVEDLTERALEAKA
Nucleotide Sequence TTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab