CircRNA Information

General Information
circRNA Basic Information
CircID chr7:99966867|99967158
Strand -
CircType exon
Host Gene ENSG00000160862.11;
Algorism CIRI2;
Sequence CTCCTGTCTGTCCCCCCACACTGCTCCTCAGGCCTTGTGGATCCATTGACTGTGATTTCTGTGGTTCAGCTCCCACATCAGGCAGGAAGGGCAGCTACTGGGTCTGAGATCCCACATTGCCTCCAACCCTTGCTTCCTAGCTGGCCTCCCAGGGCACCACGAGGGGCTGGGCCAGGCTGCTGTGCTGCACGTGGCAGGAGTAGGGGGCTGTGTCCTGCGGGGGCACTGCCACCACCACCCAGGACTGGTAAGTGCCATTTCCATTGTGAAGAACATCTCCCCGTAACTCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:99966867|99967158 hsa-miR-22-5p 0 0 1
chr7:99966867|99967158 hsa-miR-22-3p 0 0 1
chr7:99966867|99967158 hsa-miR-27a-5p 0 0 1
chr7:99966867|99967158 hsa-miR-27a-3p 0 0 1
chr7:99966867|99967158 hsa-miR-107 0 0 1
chr7:99966867|99967158 hsa-miR-34a-5p 0 0 1
chr7:99966867|99967158 hsa-miR-34a-3p 0 0 1
chr7:99966867|99967158 hsa-miR-183-5p 0 0 1
chr7:99966867|99967158 hsa-miR-183-3p 0 0 1
chr7:99966867|99967158 hsa-miR-27b-5p 0 0 1
chr7:99966867|99967158 hsa-miR-27b-3p 0 0 1
chr7:99966867|99967158 hsa-miR-449a 0 0 1
chr7:99966867|99967158 hsa-miR-412-5p 0 0 1
chr7:99966867|99967158 hsa-miR-412-3p 0 0 1
chr7:99966867|99967158 hsa-miR-638 1 0 1
chr7:99966867|99967158 hsa-miR-650 1 1 1
chr7:99966867|99967158 hsa-miR-449b-5p 0 0 1
chr7:99966867|99967158 hsa-miR-449b-3p 0 0 1
chr7:99966867|99967158 hsa-miR-874-5p 0 0 1
chr7:99966867|99967158 hsa-miR-874-3p 0 0 1
chr7:99966867|99967158 hsa-miR-920 0 0 1
chr7:99966867|99967158 hsa-miR-938 0 0 1
chr7:99966867|99967158 hsa-miR-1286 0 0 1
chr7:99966867|99967158 hsa-miR-1293 0 0 1
chr7:99966867|99967158 hsa-miR-513b-5p 0 0 1
chr7:99966867|99967158 hsa-miR-513b-3p 0 0 1
chr7:99966867|99967158 hsa-miR-1197 0 1 1
chr7:99966867|99967158 hsa-miR-1324 0 0 1
chr7:99966867|99967158 hsa-miR-491-5p 0 0 1
chr7:99966867|99967158 hsa-miR-296-3p 1 1 1
chr7:99966867|99967158 hsa-miR-299-3p 0 1 1
chr7:99966867|99967158 hsa-miR-146b-3p 0 0 1
chr7:99966867|99967158 hsa-miR-876-3p 0 0 1
chr7:99966867|99967158 hsa-miR-140-3p 0 0 1
chr7:99966867|99967158 hsa-miR-769-3p 0 1 1
chr7:99966867|99967158 hsa-miR-34c-5p 0 0 1
chr7:99966867|99967158 hsa-miR-450b-3p 0 0 1
chr7:99966867|99967158 hsa-miR-128 0 0 1
chr7:99966867|99967158 hsa-miR-323-5p 0 0 1
chr7:99966867|99967158 hsa-miR-103 0 0 1
chr7:99966867|99967158 hsa-miR-768-5p 0 0 1
chr7:99966867|99967158 hsa-miR-768-3p 0 0 1
chr7:99966867|99967158 hsa-miR-1201 0 0 1
chr7:99966867|99967158 hsa-miR-596 0 1 0
chr7:99966867|99967158 hsa-miR-608 1 1 0
chr7:99966867|99967158 hsa-miR-637 1 0 0
chr7:99966867|99967158 hsa-miR-663a 1 0 0
chr7:99966867|99967158 hsa-miR-2861 1 0 0
chr7:99966867|99967158 hsa-miR-3175 1 0 0
chr7:99966867|99967158 hsa-miR-4300 1 1 0
chr7:99966867|99967158 hsa-miR-3943 0 1 0
chr7:99966867|99967158 hsa-miR-4443 0 1 0
chr7:99966867|99967158 hsa-miR-4457 0 1 0
chr7:99966867|99967158 hsa-miR-4507 1 0 0
chr7:99966867|99967158 hsa-miR-4525 1 0 0
chr7:99966867|99967158 hsa-miR-4654 0 1 0
chr7:99966867|99967158 hsa-miR-4656 1 0 0
chr7:99966867|99967158 hsa-miR-4682 0 1 0
chr7:99966867|99967158 hsa-miR-4689 1 1 0
chr7:99966867|99967158 hsa-miR-4692 1 0 0
chr7:99966867|99967158 hsa-miR-4706 1 0 0
chr7:99966867|99967158 hsa-miR-4739 1 0 0
chr7:99966867|99967158 hsa-miR-5093 0 1 0
chr7:99966867|99967158 hsa-miR-6081 0 1 0
chr7:99966867|99967158 hsa-miR-8089 1 1 0
chr7:99966867|99967158 hsa-miR-9898 0 1 0
chr7:99966867|99967158 hsa-miR-12121 0 1 0
chr7:99966867|99967158 hsa-miR-143-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6825-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6799-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6089 1 0 0
chr7:99966867|99967158 hsa-miR-1225-3p 1 0 0
chr7:99966867|99967158 hsa-miR-3192-5p 0 1 0
chr7:99966867|99967158 hsa-miR-4695-5p 1 1 0
chr7:99966867|99967158 hsa-miR-8069 1 0 0
chr7:99966867|99967158 hsa-miR-6776-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6849-3p 0 1 0
chr7:99966867|99967158 hsa-miR-6742-5p 1 0 0
chr7:99966867|99967158 hsa-miR-3180-3p 1 0 0
chr7:99966867|99967158 hsa-miR-6796-5p 1 1 0
chr7:99966867|99967158 hsa-miR-4655-3p 0 1 0
chr7:99966867|99967158 hsa-miR-6798-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6782-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6874-5p 1 0 0
chr7:99966867|99967158 hsa-miR-7109-5p 0 1 0
chr7:99966867|99967158 hsa-miR-1908-3p 1 0 0
chr7:99966867|99967158 hsa-miR-6823-5p 1 0 0
chr7:99966867|99967158 hsa-miR-4713-3p 1 0 0
chr7:99966867|99967158 hsa-miR-6749-5p 1 0 0
chr7:99966867|99967158 hsa-miR-4743-5p 1 0 0
chr7:99966867|99967158 hsa-miR-3160-3p 0 1 0
chr7:99966867|99967158 hsa-miR-6717-5p 1 1 0
chr7:99966867|99967158 hsa-miR-3162-5p 1 1 0
chr7:99966867|99967158 hsa-miR-6828-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6769a-3p 0 1 0
chr7:99966867|99967158 hsa-miR-3922-5p 0 1 0
chr7:99966867|99967158 hsa-miR-3944-5p 0 1 0
chr7:99966867|99967158 hsa-miR-5000-3p 0 1 0
chr7:99966867|99967158 hsa-miR-4746-3p 1 1 0
chr7:99966867|99967158 hsa-miR-3074-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6856-3p 0 1 0
chr7:99966867|99967158 hsa-miR-6886-3p 0 1 0
chr7:99966867|99967158 hsa-miR-371b-3p 0 1 0
chr7:99966867|99967158 hsa-miR-3688-3p 0 1 0
chr7:99966867|99967158 hsa-miR-1233-5p 1 1 0
chr7:99966867|99967158 hsa-miR-1273h-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6778-5p 0 1 0
chr7:99966867|99967158 hsa-miR-1343-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6726-5p 1 1 0
chr7:99966867|99967158 hsa-miR-6754-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6813-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6722-3p 1 0 0
chr7:99966867|99967158 hsa-miR-6779-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6797-5p 1 0 0
chr7:99966867|99967158 hsa-miR-1237-5p 1 0 0
chr7:99966867|99967158 hsa-miR-1909-3p 1 0 0
chr7:99966867|99967158 hsa-miR-328-5p 1 0 0
chr7:99966867|99967158 hsa-miR-4726-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6777-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6795-5p 1 1 0
chr7:99966867|99967158 hsa-miR-6846-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6848-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6858-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6887-5p 1 1 0
chr7:99966867|99967158 hsa-miR-939-5p 1 1 0
chr7:99966867|99967158 hsa-miR-3940-5p 1 0 0
chr7:99966867|99967158 hsa-miR-6849-5p 1 0 0
chr7:99966867|99967158 hsa-miR-5591-5p 1 1 0
chr7:99966867|99967158 hsa-miR-6791-5p 0 1 0
chr7:99966867|99967158 hsa-miR-6727-3p 0 1 0
chr7:99966867|99967158 hsa-miR-33b-3p 0 1 0
chr7:99966867|99967158 hsa-miR-2682-5p 0 1 0
chr7:99966867|99967158 hsa-miR-5197-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:99966867|99967158
ORF Type ORF1
Protein Length 96
Nucleotide Length 288
Protein Sequence MSVPPHCSSGLVDPLTVISVVQLPHQAGRAATGSEIPHCLQPLLPSWPPRAPRGAGPGCCAARGRSRGLCPAGALPPPPRTGKCHFHCEEHLPVTQ
Nucleotide Sequence CTGTCTGTCCCCCCACACTGCTCCTCAGGCCTTGTGGATCCATTGACTGTGATTTCTGTGGTTCAGCTCCCACATCAGGCAGGAAGGGCAGCTACTGGGTCTGAGATCCCACATTGCCTCCAACCCTTGCTTCCTAGCTGGCCTCCCAGGGCACCACGAGGGGCTGGGCCAGGCTGCTGTGCTGCACGTGGCAGGAGTAGGGGGCTGTGTCCTGCGGGGGCACTGCCACCACCACCCAGGACTGGTAAGTGCCATTTCCATTGTGAAGAACATCTCCCCGTAACTCAG
CircID chr7:99966867|99967158
ORF Type ORF2
Protein Length 75
Nucleotide Length 228
Protein Sequence MWFSSHIRQEGQLLGLRSHIASNPCFLAGLPGHHEGLGQAAVLHVAGVGGCVLRGHCHHHPGLVSAISIVKNISP
Nucleotide Sequence CTGTGGTTCAGCTCCCACATCAGGCAGGAAGGGCAGCTACTGGGTCTGAGATCCCACATTGCCTCCAACCCTTGCTTCCTAGCTGGCCTCCCAGGGCACCACGAGGGGCTGGGCCAGGCTGCTGTGCTGCACGTGGCAGGAGTAGGGGGCTGTGTCCTGCGGGGGCACTGCCACCACCACCCAGGACTGGTAAGTGCCATTTCCATTGTGAAGAACATCTCCCCGTAA
CircID chr7:99966867|99967158
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLLRPCGSIDCDFCGSAPTSGRKGSYWV
Nucleotide Sequence CTGCTCCTCAGGCCTTGTGGATCCATTGACTGTGATTTCTGTGGTTCAGCTCCCACATCAGGCAGGAAGGGCAGCTACTGGGTCTGA
CircID chr7:99966867|99967158
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MPFLPDVGAEPQKSQSMDPQGLRSSVGGQTG
Nucleotide Sequence CTGCCCTTCCTGCCTGATGTGGGAGCTGAACCACAGAAATCACAGTCAATGGATCCACAAGGCCTGAGGAGCAGTGTGGGGGGACAGACAGGA
CircID chr7:99966867|99967158
ORF Type ORF5
Protein Length 87
Nucleotide Length 264
Protein Sequence LSYGEMFFTMEMALTSPGWWWQCPRRTQPPTPATCSTAAWPSPSWCPGRPARKQGLEAMWDLRPSSCPSCLMWELNHRNHSQWIHKA
Nucleotide Sequence CTGAGTTACGGGGAGATGTTCTTCACAATGGAAATGGCACTTACCAGTCCTGGGTGGTGGTGGCAGTGCCCCCGCAGGACACAGCCCCCTACTCCTGCCACGTGCAGCACAGCAGCCTGGCCCAGCCCCTCGTGGTGCCCTGGGAGGCCAGCTAGGAAGCAAGGGTTGGAGGCAATGTGGGATCTCAGACCCAGTAGCTGCCCTTCCTGCCTGATGTGGGAGCTGAACCACAGAAATCACAGTCAATGGATCCACAAGGCCTGA
CircID chr7:99966867|99967158
ORF Type ORF6
Protein Length 54
Nucleotide Length 165
Protein Sequence MGGGGSAPAGHSPLLLPRAAQQPGPAPRGALGGQLGSKGWRQCGISDPVAALPA
Nucleotide Sequence CTGGGTGGTGGTGGCAGTGCCCCCGCAGGACACAGCCCCCTACTCCTGCCACGTGCAGCACAGCAGCCTGGCCCAGCCCCTCGTGGTGCCCTGGGAGGCCAGCTAGGAAGCAAGGGTTGGAGGCAATGTGGGATCTCAGACCCAGTAGCTGCCCTTCCTGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab