CircRNA Information

General Information
circRNA Basic Information
CircID chr8:100239303|100240444
Strand +
CircType exon
Host Gene ENSG00000104450.11;
Algorism CIRI2;
Sequence CTCCCCTGCAGGTCTTCCAGGCTCCTCCTTGCCTTCATTCACCTCTTGAATCTCAATTTTCCTTCTCTCCTTTTCTTTGTTGAATGGTGCTGTCTTATCCTTAAGATTAAGGAGTCTAGTTACCTCTTCCAGTTCCATCTTTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:100239303|100240444 hsa-miR-29a-5p 0 0 1
chr8:100239303|100240444 hsa-miR-29a-3p 0 0 1
chr8:100239303|100240444 hsa-miR-185-5p 0 0 1
chr8:100239303|100240444 hsa-miR-185-3p 0 0 1
chr8:100239303|100240444 hsa-miR-29c-5p 0 0 1
chr8:100239303|100240444 hsa-miR-29c-3p 0 0 1
chr8:100239303|100240444 hsa-miR-335-5p 0 0 1
chr8:100239303|100240444 hsa-miR-335-3p 0 0 1
chr8:100239303|100240444 hsa-miR-641 0 0 1
chr8:100239303|100240444 hsa-miR-421 0 0 1
chr8:100239303|100240444 hsa-miR-765 0 0 1
chr8:100239303|100240444 hsa-miR-1205 0 0 1
chr8:100239303|100240444 hsa-miR-1257 0 0 1
chr8:100239303|100240444 hsa-miR-1252-5p 0 0 1
chr8:100239303|100240444 hsa-miR-1252-3p 0 0 1
chr8:100239303|100240444 hsa-miR-767-5p 0 0 1
chr8:100239303|100240444 hsa-miR-7 0 0 1
chr8:100239303|100240444 hsa-miR-1254 0 0 1
chr8:100239303|100240444 hsa-miR-29b 0 0 1
chr8:100239303|100240444 hsa-miR-661 1 0 0
chr8:100239303|100240444 hsa-miR-3154 1 0 0
chr8:100239303|100240444 hsa-miR-4298 1 0 0
chr8:100239303|100240444 hsa-miR-4306 1 0 0
chr8:100239303|100240444 hsa-miR-4428 1 0 0
chr8:100239303|100240444 hsa-miR-4448 0 1 0
chr8:100239303|100240444 hsa-miR-4644 1 0 0
chr8:100239303|100240444 hsa-miR-4647 0 1 0
chr8:100239303|100240444 hsa-miR-4662b 0 1 0
chr8:100239303|100240444 hsa-miR-4688 1 0 0
chr8:100239303|100240444 hsa-miR-4689 1 0 0
chr8:100239303|100240444 hsa-miR-4739 1 0 0
chr8:100239303|100240444 hsa-miR-5192 1 0 0
chr8:100239303|100240444 hsa-miR-5739 1 0 0
chr8:100239303|100240444 hsa-miR-6090 1 0 0
chr8:100239303|100240444 hsa-miR-6124 1 0 0
chr8:100239303|100240444 hsa-miR-6126 0 1 0
chr8:100239303|100240444 hsa-miR-6165 1 0 0
chr8:100239303|100240444 hsa-miR-8082 1 0 0
chr8:100239303|100240444 hsa-miR-8085 1 0 0
chr8:100239303|100240444 hsa-miR-12118 1 0 0
chr8:100239303|100240444 hsa-miR-6809-5p 1 0 0
chr8:100239303|100240444 hsa-miR-7106-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6894-5p 1 0 0
chr8:100239303|100240444 hsa-miR-7851-3p 1 0 0
chr8:100239303|100240444 hsa-miR-6757-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6873-5p 1 0 0
chr8:100239303|100240444 hsa-miR-7847-3p 1 0 0
chr8:100239303|100240444 hsa-miR-4695-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6746-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6827-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6760-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6782-5p 1 0 0
chr8:100239303|100240444 hsa-miR-1226-5p 1 0 0
chr8:100239303|100240444 hsa-miR-4640-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6749-5p 1 0 0
chr8:100239303|100240444 hsa-miR-3925-5p 1 0 0
chr8:100239303|100240444 hsa-miR-7159-5p 0 1 0
chr8:100239303|100240444 hsa-miR-1207-5p 1 0 0
chr8:100239303|100240444 hsa-miR-4763-3p 1 0 0
chr8:100239303|100240444 hsa-miR-6812-5p 1 0 0
chr8:100239303|100240444 hsa-miR-1343-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6754-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6851-5p 1 0 0
chr8:100239303|100240444 hsa-miR-1249-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6788-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6797-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6808-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6879-5p 1 0 0
chr8:100239303|100240444 hsa-miR-7111-5p 1 0 0
chr8:100239303|100240444 hsa-miR-5196-5p 1 0 0
chr8:100239303|100240444 hsa-miR-10396b-5p 1 0 0
chr8:100239303|100240444 hsa-miR-10526-3p 1 0 0
chr8:100239303|100240444 hsa-miR-6846-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6858-5p 1 0 0
chr8:100239303|100240444 hsa-miR-4723-5p 1 0 0
chr8:100239303|100240444 hsa-miR-939-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6731-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6758-5p 1 0 0
chr8:100239303|100240444 hsa-miR-6856-5p 1 0 0
chr8:100239303|100240444 hsa-miR-3116 1 0 0
chr8:100239303|100240444 hsa-miR-3173-3p 1 0 0
chr8:100239303|100240444 hsa-miR-6891-5p 1 0 0
chr8:100239303|100240444 hsa-miR-3184-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:100239303|100240444
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MNLNFPSLLFFVEWCCLILKIKESSYLFQFHLC
Nucleotide Sequence TTGAATCTCAATTTTCCTTCTCTCCTTTTCTTTGTTGAATGGTGCTGTCTTATCCTTAAGATTAAGGAGTCTAGTTACCTCTTCCAGTTCCATCTTTGC
CircID chr8:100239303|100240444
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MQVFQAPPCLHSPLESQFSFSPFLC
Nucleotide Sequence CTGCAGGTCTTCCAGGCTCCTCCTTGCCTTCATTCACCTCTTGAATCTCAATTTTCCTTCTCTCCTTTTCTTTGTTGA
CircID chr8:100239303|100240444
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MELEEVTRLLNLKDKTAPFNKEKERRKIEIQEVNEGKEEPGRPAGE
Nucleotide Sequence ATGGAACTGGAAGAGGTAACTAGACTCCTTAATCTTAAGGATAAGACAGCACCATTCAACAAAGAAAAGGAGAGAAGGAAAATTGAGATTCAAGAGGTGAATGAAGGCAAGGAGGAGCCTGGAAGACCTGCAGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab