CircRNA Information

General Information
circRNA Basic Information
CircID chr8:108449823|108455930
Strand +
CircType exon
Host Gene ENSG00000104412.7;
Algorism find_circ;CIRI2;DCC;
Sequence AAATGAGAGATAAAATGAGAAAATGGAGAGAAGAAAACTCAAGAAATAGTGAGCAAATTGTGGAAGTTGGAGAAGAATTAATTAATGAATATGCTTCTAAGCTGGGAGATGATATTTTTTTCCCCCTTTATGTGTATCTAGTTTGGATCATATATGAACAGGTGATGATTGCAGCACTAGACTATGGTCGGGATGACTTGGCATTGTTTTGTCTTCAAGAGCTGAGAAGACAGTTCCCTGGCAGTCACAGAGTCAAGCGATTAACAGGCATGAGATTTGAAGCCATGGAAAGATGTTTCTTTTTCTTTTTAAATAGATATGATGATGCTATACAGCTATATGATAGGATTTTACAAGAAGATCCAACTAACACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:108449823|108455930 hsa-miR-107 0 0 1
chr8:108449823|108455930 hsa-miR-34a-5p 0 0 1
chr8:108449823|108455930 hsa-miR-34a-3p 0 0 1
chr8:108449823|108455930 hsa-miR-141-5p 0 0 1
chr8:108449823|108455930 hsa-miR-141-3p 0 0 1
chr8:108449823|108455930 hsa-miR-143-5p 0 0 1
chr8:108449823|108455930 hsa-miR-143-3p 0 0 1
chr8:108449823|108455930 hsa-miR-185-5p 0 0 1
chr8:108449823|108455930 hsa-miR-185-3p 0 0 1
chr8:108449823|108455930 hsa-miR-200a-5p 0 0 1
chr8:108449823|108455930 hsa-miR-200a-3p 0 0 1
chr8:108449823|108455930 hsa-miR-335-5p 0 0 1
chr8:108449823|108455930 hsa-miR-335-3p 0 0 1
chr8:108449823|108455930 hsa-miR-449a 0 0 1
chr8:108449823|108455930 hsa-miR-511-5p 0 0 1
chr8:108449823|108455930 hsa-miR-511-3p 0 0 1
chr8:108449823|108455930 hsa-miR-539-5p 0 0 1
chr8:108449823|108455930 hsa-miR-539-3p 0 0 1
chr8:108449823|108455930 hsa-miR-552-5p 0 0 1
chr8:108449823|108455930 hsa-miR-552-3p 0 0 1
chr8:108449823|108455930 hsa-miR-577 0 0 1
chr8:108449823|108455930 hsa-miR-620 0 0 1
chr8:108449823|108455930 hsa-miR-449b-5p 0 0 1
chr8:108449823|108455930 hsa-miR-449b-3p 0 0 1
chr8:108449823|108455930 hsa-miR-1301-5p 0 0 1
chr8:108449823|108455930 hsa-miR-1301-3p 0 0 1
chr8:108449823|108455930 hsa-miR-921 0 0 1
chr8:108449823|108455930 hsa-miR-1290 0 0 1
chr8:108449823|108455930 hsa-miR-1253 0 1 1
chr8:108449823|108455930 hsa-miR-1256 0 0 1
chr8:108449823|108455930 hsa-miR-1270 0 0 1
chr8:108449823|108455930 hsa-miR-1272 1 1 1
chr8:108449823|108455930 hsa-miR-1284 0 0 1
chr8:108449823|108455930 hsa-miR-1322 0 0 1
chr8:108449823|108455930 hsa-miR-127-5p 0 0 1
chr8:108449823|108455930 hsa-miR-125a-3p 0 0 1
chr8:108449823|108455930 hsa-miR-34c-5p 0 0 1
chr8:108449823|108455930 hsa-miR-1274a 0 0 1
chr8:108449823|108455930 hsa-miR-103 0 0 1
chr8:108449823|108455930 hsa-miR-1300 0 0 1
chr8:108449823|108455930 hsa-miR-1259 0 0 1
chr8:108449823|108455930 hsa-miR-765 1 0 0
chr8:108449823|108455930 hsa-miR-4270 1 0 0
chr8:108449823|108455930 hsa-miR-4271 1 0 0
chr8:108449823|108455930 hsa-miR-4450 1 0 0
chr8:108449823|108455930 hsa-miR-3689c 1 0 0
chr8:108449823|108455930 hsa-miR-4516 1 0 0
chr8:108449823|108455930 hsa-miR-4517 1 1 0
chr8:108449823|108455930 hsa-miR-4531 1 0 0
chr8:108449823|108455930 hsa-miR-4538 1 0 0
chr8:108449823|108455930 hsa-miR-4644 0 1 0
chr8:108449823|108455930 hsa-miR-4647 1 0 0
chr8:108449823|108455930 hsa-miR-4657 1 0 0
chr8:108449823|108455930 hsa-miR-4689 1 0 0
chr8:108449823|108455930 hsa-miR-4784 1 0 0
chr8:108449823|108455930 hsa-miR-5191 1 0 0
chr8:108449823|108455930 hsa-miR-5739 1 0 0
chr8:108449823|108455930 hsa-miR-6086 1 0 0
chr8:108449823|108455930 hsa-miR-6127 1 0 0
chr8:108449823|108455930 hsa-miR-6129 1 0 0
chr8:108449823|108455930 hsa-miR-8073 1 1 0
chr8:108449823|108455930 hsa-miR-8082 0 1 0
chr8:108449823|108455930 hsa-miR-8085 1 0 0
chr8:108449823|108455930 hsa-miR-12115 1 0 0
chr8:108449823|108455930 hsa-miR-12128 1 0 0
chr8:108449823|108455930 hsa-miR-135a-3p 1 0 0
chr8:108449823|108455930 hsa-miR-92a-1-5p 1 1 0
chr8:108449823|108455930 hsa-miR-3150a-3p 1 0 0
chr8:108449823|108455930 hsa-miR-6825-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6894-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6799-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6833-5p 1 1 0
chr8:108449823|108455930 hsa-miR-7851-3p 1 0 0
chr8:108449823|108455930 hsa-miR-5187-5p 0 1 0
chr8:108449823|108455930 hsa-miR-6515-5p 1 0 0
chr8:108449823|108455930 hsa-miR-3192-5p 1 1 0
chr8:108449823|108455930 hsa-miR-7847-3p 1 0 0
chr8:108449823|108455930 hsa-miR-4709-3p 1 0 0
chr8:108449823|108455930 hsa-miR-505-5p 1 1 0
chr8:108449823|108455930 hsa-miR-8069 1 0 0
chr8:108449823|108455930 hsa-miR-7845-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6871-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6760-5p 1 0 0
chr8:108449823|108455930 hsa-miR-3150b-3p 1 0 0
chr8:108449823|108455930 hsa-miR-30b-3p 0 1 0
chr8:108449823|108455930 hsa-miR-6740-5p 1 0 0
chr8:108449823|108455930 hsa-miR-30c-2-3p 0 1 0
chr8:108449823|108455930 hsa-miR-296-3p 1 0 0
chr8:108449823|108455930 hsa-miR-3160-3p 0 1 0
chr8:108449823|108455930 hsa-miR-103a-3p 1 0 0
chr8:108449823|108455930 hsa-miR-584-3p 0 1 0
chr8:108449823|108455930 hsa-miR-383-3p 0 1 0
chr8:108449823|108455930 hsa-miR-6868-5p 0 1 0
chr8:108449823|108455930 hsa-miR-221-5p 0 1 0
chr8:108449823|108455930 hsa-miR-3689b-3p 1 0 0
chr8:108449823|108455930 hsa-miR-6778-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6870-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6726-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6851-5p 1 0 0
chr8:108449823|108455930 hsa-miR-1249-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6788-5p 1 1 0
chr8:108449823|108455930 hsa-miR-6797-5p 1 1 0
chr8:108449823|108455930 hsa-miR-6808-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6780b-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6858-5p 1 0 0
chr8:108449823|108455930 hsa-miR-30c-1-3p 0 1 0
chr8:108449823|108455930 hsa-miR-6731-5p 1 0 0
chr8:108449823|108455930 hsa-miR-6856-5p 1 0 0
chr8:108449823|108455930 hsa-miR-3679-5p 1 0 0
chr8:108449823|108455930 hsa-miR-497-5p 1 0 0
chr8:108449823|108455930 hsa-miR-4704-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:108449823|108455930
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MIQISSPSLEAYSLINSSPTSTICSLFLEFSSLHFLILSLI
Nucleotide Sequence ATGATCCAAATATCATCTCCCAGCTTAGAAGCATATTCATTAATTAATTCTTCTCCAACTTCCACAATTTGCTCACTATTTCTTGAGTTTTCTTCTCTCCATTTTCTCATTTTATCTCTCATT
CircID chr8:108449823|108455930
ORF Type ORF2
Protein Length 107
Nucleotide Length 321
Protein Sequence MRDKMRKWREENSRNSEQIVEVGEELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNT
Nucleotide Sequence ATGAGAGATAAAATGAGAAAATGGAGAGAAGAAAACTCAAGAAATAGTGAGCAAATTGTGGAAGTTGGAGAAGAATTAATTAATGAATATGCTTCTAAGCTGGGAGATGATATTTGGATCATATATGAACAGGTGATGATTGCAGCACTAGACTATGGTCGGGATGACTTGGCATTGTTTTGTCTTCAAGAGCTGAGAAGACAGTTCCCTGGCAGTCACAGAGTCAAGCGATTAACAGGCATGAGATTTGAAGCCATGGAAAGATATGATGATGCTATACAGCTATATGATAGGATTTTACAAGAAGATCCAACTAACACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:108449823|108455930 U2AF2 2 4 0
chr8:108449823|108455930 MOV10 0 1 0
chr8:108449823|108455930 ELAVL1 2 2 2
chr8:108449823|108455930 TAF15 2 1 0
chr8:108449823|108455930 FMR1 0 1 2
chr8:108449823|108455930 CPSF6 0 0 1
chr8:108449823|108455930 DGCR8 0 0 1
chr8:108449823|108455930 SRSF7 0 1 0
chr8:108449823|108455930 SRSF1 1 0 2
chr8:108449823|108455930 NOP58 1 1 3
chr8:108449823|108455930 NOP56 1 1 1
chr8:108449823|108455930 DDX54 2 2 9
chr8:108449823|108455930 PTBP1 1 0 0
chr8:108449823|108455930 TRA2A 2 0 2
chr8:108449823|108455930 ZNF184 1 1 3
chr8:108449823|108455930 HNRNPA1 0 1 0
chr8:108449823|108455930 DDX3X 0 0 1
chr8:108449823|108455930 ACIN1 1 0 0
chr8:108449823|108455930 LIN28B 0 0 3
chr8:108449823|108455930 LIN28A 0 0 2
chr8:108449823|108455930 IGF2BP2 1 2 4
chr8:108449823|108455930 BUD13 0 1 1
chr8:108449823|108455930 RBFOX2 0 1 0
chr8:108449823|108455930 CSTF2T 2 0 2
chr8:108449823|108455930 RNF219 1 0 0
chr8:108449823|108455930 FBL 0 0 1
chr8:108449823|108455930 EIF4A3 1 3 7
chr8:108449823|108455930 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab