CircRNA Information

General Information
circRNA Basic Information
CircID chr8:118195974|118196170
Strand +
CircType exon
Host Gene ENSG00000177570.12;
Algorism CIRI2;
Sequence ACAGCCCATTGGAAACCACCCACGCCTGAGATTTGGAAACCTGACGGAAAGGGAGGAAGGTCCAAATGAGTCAGCAGCAGGATGACTCACCACAAGCCTGGCAGGCTGCAGAGCCAGAGAAGGGGGCTTCCAACAAGGAACTCAGAGAAGTTGCAGTCACCACCAAGATCTGGCCCTTCGGCAGGTCAGCACCAGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:118195974|118196170 hsa-miR-204-5p 0 0 1
chr8:118195974|118196170 hsa-miR-204-3p 0 0 1
chr8:118195974|118196170 hsa-miR-211-5p 0 0 1
chr8:118195974|118196170 hsa-miR-211-3p 0 0 1
chr8:118195974|118196170 hsa-miR-216a-5p 0 0 1
chr8:118195974|118196170 hsa-miR-216a-3p 0 0 1
chr8:118195974|118196170 hsa-miR-134-5p 0 0 1
chr8:118195974|118196170 hsa-miR-134-3p 0 0 1
chr8:118195974|118196170 hsa-miR-149-5p 0 0 1
chr8:118195974|118196170 hsa-miR-149-3p 0 0 1
chr8:118195974|118196170 hsa-miR-370-5p 0 0 1
chr8:118195974|118196170 hsa-miR-370-3p 0 0 1
chr8:118195974|118196170 hsa-miR-326 0 0 1
chr8:118195974|118196170 hsa-miR-345-5p 0 0 1
chr8:118195974|118196170 hsa-miR-345-3p 0 0 1
chr8:118195974|118196170 hsa-miR-492 0 0 1
chr8:118195974|118196170 hsa-miR-579-5p 0 0 1
chr8:118195974|118196170 hsa-miR-579-3p 0 0 1
chr8:118195974|118196170 hsa-miR-596 0 0 1
chr8:118195974|118196170 hsa-miR-631 0 0 1
chr8:118195974|118196170 hsa-miR-891b 1 0 1
chr8:118195974|118196170 hsa-miR-760 1 0 1
chr8:118195974|118196170 hsa-miR-942-5p 0 0 1
chr8:118195974|118196170 hsa-miR-942-3p 0 0 1
chr8:118195974|118196170 hsa-miR-1205 0 0 1
chr8:118195974|118196170 hsa-miR-1293 0 0 1
chr8:118195974|118196170 hsa-miR-1266-5p 0 0 1
chr8:118195974|118196170 hsa-miR-1266-3p 0 0 1
chr8:118195974|118196170 hsa-miR-671-5p 0 0 1
chr8:118195974|118196170 hsa-miR-1184 0 0 1
chr8:118195974|118196170 hsa-miR-502-5p 0 0 1
chr8:118195974|118196170 hsa-miR-876-3p 0 0 1
chr8:118195974|118196170 hsa-miR-628-5p 0 0 1
chr8:118195974|118196170 hsa-miR-330-5p 0 0 1
chr8:118195974|118196170 hsa-miR-323-5p 0 0 1
chr8:118195974|118196170 hsa-miR-608 1 0 0
chr8:118195974|118196170 hsa-miR-657 1 0 0
chr8:118195974|118196170 hsa-miR-1268a 1 0 0
chr8:118195974|118196170 hsa-miR-2861 1 0 0
chr8:118195974|118196170 hsa-miR-3937 1 0 0
chr8:118195974|118196170 hsa-miR-1268b 1 0 0
chr8:118195974|118196170 hsa-miR-4651 1 0 0
chr8:118195974|118196170 hsa-miR-4682 1 0 0
chr8:118195974|118196170 hsa-miR-6071 1 0 0
chr8:118195974|118196170 hsa-miR-9718 1 0 0
chr8:118195974|118196170 hsa-miR-4433b-3p 1 0 0
chr8:118195974|118196170 hsa-miR-4433a-3p 1 0 0
chr8:118195974|118196170 hsa-miR-6759-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6748-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6793-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6782-5p 1 0 0
chr8:118195974|118196170 hsa-miR-7161-3p 1 0 0
chr8:118195974|118196170 hsa-miR-4750-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6773-3p 1 0 0
chr8:118195974|118196170 hsa-miR-1233-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6787-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6803-5p 1 0 0
chr8:118195974|118196170 hsa-miR-3127-3p 1 0 0
chr8:118195974|118196170 hsa-miR-4649-5p 1 0 0
chr8:118195974|118196170 hsa-miR-6729-5p 1 0 0
chr8:118195974|118196170 hsa-miR-3085-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:118195974|118196170
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MTHHKPGRLQSQRRGLPTRNSEKLQSPPRSGPSAGQHQ
Nucleotide Sequence ATGACTCACCACAAGCCTGGCAGGCTGCAGAGCCAGAGAAGGGGGCTTCCAACAAGGAACTCAGAGAAGTTGCAGTCACCACCAAGATCTGGCCCTTCGGCAGGTCAGCACCAG
CircID chr8:118195974|118196170
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MAGCRAREGGFQQGTQRSCSHHQDLALRQVSTR
Nucleotide Sequence CTGGCAGGCTGCAGAGCCAGAGAAGGGGGCTTCCAACAAGGAACTCAGAGAAGTTGCAGTCACCACCAAGATCTGGCCCTTCGGCAGGTCAGCACCAGG
CircID chr8:118195974|118196170
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MSQQQDDSPQAWQAAEPEKGASNKELREVAVTTKIWPFGRSAPG
Nucleotide Sequence ATGAGTCAGCAGCAGGATGACTCACCACAAGCCTGGCAGGCTGCAGAGCCAGAGAAGGGGGCTTCCAACAAGGAACTCAGAGAAGTTGCAGTCACCACCAAGATCTGGCCCTTCGGCAGGTCAGCACCAGGA
CircID chr8:118195974|118196170
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MLLTHLDLPPFPSGFQISGVGGFQWA
Nucleotide Sequence CTGCTGCTGACTCATTTGGACCTTCCTCCCTTTCCGTCAGGTTTCCAAATCTCAGGCGTGGGTGGTTTCCAATGGGCT
CircID chr8:118195974|118196170
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MPKGQILVVTATSLSSLLEAPFSGSAACQACGESSCC
Nucleotide Sequence CTGCCGAAGGGCCAGATCTTGGTGGTGACTGCAACTTCTCTGAGTTCCTTGTTGGAAGCCCCCTTCTCTGGCTCTGCAGCCTGCCAGGCTTGTGGTGAGTCATCCTGCTGCTGA
CircID chr8:118195974|118196170
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MALQPARLVVSHPAADSFGPSSLSVRFPNLRRGWFPMGC
Nucleotide Sequence CTGGCTCTGCAGCCTGCCAGGCTTGTGGTGAGTCATCCTGCTGCTGACTCATTTGGACCTTCCTCCCTTTCCGTCAGGTTTCCAAATCTCAGGCGTGGGTGGTTTCCAATGGGCTGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab