CircRNA Information

General Information
circRNA Basic Information
CircID chr8:11844116|11844357
Strand +
CircType exon
Host Gene ENSG00000164733.19;
Algorism CIRI2;
Sequence AAGGAATGCCTGTGCCAATAAAAGTTTTCTCCAACTTGAAGTCTACTCTGATGGGATCTCAGATCCTTTGTCACTGCCTATAGACTTGTAGCTGCTGTCTCTCTTTGTCCCTGCAGAGAATCACGTCCTGGAACTGCATGTTCTTGCGACTCTTGGGACTTCATCTTAACTTCTCGCTGCCCCAGCCATGTTTTCAACCATGGCATCCCTCCCCCAATTAGTTCCCTGTCATCCTCGTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:11844116|11844357 hsa-miR-26b-5p 0 0 1
chr8:11844116|11844357 hsa-miR-26b-3p 0 0 1
chr8:11844116|11844357 hsa-miR-96-5p 0 0 1
chr8:11844116|11844357 hsa-miR-96-3p 0 0 1
chr8:11844116|11844357 hsa-miR-34a-5p 0 0 1
chr8:11844116|11844357 hsa-miR-34a-3p 0 0 1
chr8:11844116|11844357 hsa-miR-449a 0 0 1
chr8:11844116|11844357 hsa-miR-563 0 0 1
chr8:11844116|11844357 hsa-miR-570-5p 0 0 1
chr8:11844116|11844357 hsa-miR-570-3p 0 0 1
chr8:11844116|11844357 hsa-miR-620 0 0 1
chr8:11844116|11844357 hsa-miR-625-5p 0 0 1
chr8:11844116|11844357 hsa-miR-625-3p 0 0 1
chr8:11844116|11844357 hsa-miR-646 1 0 1
chr8:11844116|11844357 hsa-miR-449b-5p 0 0 1
chr8:11844116|11844357 hsa-miR-449b-3p 0 0 1
chr8:11844116|11844357 hsa-miR-411-5p 0 0 1
chr8:11844116|11844357 hsa-miR-411-3p 0 0 1
chr8:11844116|11844357 hsa-miR-1271-5p 0 0 1
chr8:11844116|11844357 hsa-miR-1271-3p 0 0 1
chr8:11844116|11844357 hsa-miR-665 0 0 1
chr8:11844116|11844357 hsa-miR-940 0 0 1
chr8:11844116|11844357 hsa-miR-1205 0 0 1
chr8:11844116|11844357 hsa-miR-1297 0 0 1
chr8:11844116|11844357 hsa-miR-1270 0 0 1
chr8:11844116|11844357 hsa-miR-1275 1 1 1
chr8:11844116|11844357 hsa-miR-486-3p 1 0 1
chr8:11844116|11844357 hsa-miR-885-3p 1 1 1
chr8:11844116|11844357 hsa-miR-1184 0 0 1
chr8:11844116|11844357 hsa-miR-34c-5p 0 1 1
chr8:11844116|11844357 hsa-miR-26a 0 0 1
chr8:11844116|11844357 hsa-miR-611 1 0 0
chr8:11844116|11844357 hsa-miR-612 1 0 0
chr8:11844116|11844357 hsa-miR-762 1 0 0
chr8:11844116|11844357 hsa-miR-1183 1 0 0
chr8:11844116|11844357 hsa-miR-3131 1 0 0
chr8:11844116|11844357 hsa-miR-3132 1 0 0
chr8:11844116|11844357 hsa-miR-3196 1 0 0
chr8:11844116|11844357 hsa-miR-4298 1 0 0
chr8:11844116|11844357 hsa-miR-4260 1 0 0
chr8:11844116|11844357 hsa-miR-4270 1 0 0
chr8:11844116|11844357 hsa-miR-4271 1 0 0
chr8:11844116|11844357 hsa-miR-3660 1 0 0
chr8:11844116|11844357 hsa-miR-4462 1 0 0
chr8:11844116|11844357 hsa-miR-2392 1 0 0
chr8:11844116|11844357 hsa-miR-4525 1 0 0
chr8:11844116|11844357 hsa-miR-3960 1 0 0
chr8:11844116|11844357 hsa-miR-4688 1 1 0
chr8:11844116|11844357 hsa-miR-4706 1 0 0
chr8:11844116|11844357 hsa-miR-4737 1 0 0
chr8:11844116|11844357 hsa-miR-4739 1 0 0
chr8:11844116|11844357 hsa-miR-5090 1 0 0
chr8:11844116|11844357 hsa-miR-5690 0 1 0
chr8:11844116|11844357 hsa-miR-5698 0 1 0
chr8:11844116|11844357 hsa-miR-5787 1 1 0
chr8:11844116|11844357 hsa-miR-6076 1 0 0
chr8:11844116|11844357 hsa-miR-6090 1 0 0
chr8:11844116|11844357 hsa-miR-6132 1 0 0
chr8:11844116|11844357 hsa-miR-7150 1 0 0
chr8:11844116|11844357 hsa-miR-8089 1 0 0
chr8:11844116|11844357 hsa-miR-211-3p 1 1 0
chr8:11844116|11844357 hsa-miR-135a-3p 1 0 0
chr8:11844116|11844357 hsa-miR-6894-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6799-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6510-5p 0 1 0
chr8:11844116|11844357 hsa-miR-6804-5p 1 0 0
chr8:11844116|11844357 hsa-miR-1236-5p 1 1 0
chr8:11844116|11844357 hsa-miR-5187-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6880-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6744-5p 1 1 0
chr8:11844116|11844357 hsa-miR-7154-3p 1 0 0
chr8:11844116|11844357 hsa-miR-6727-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6721-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4655-5p 1 0 0
chr8:11844116|11844357 hsa-miR-197-5p 1 0 0
chr8:11844116|11844357 hsa-miR-8069 1 0 0
chr8:11844116|11844357 hsa-miR-7845-5p 1 1 0
chr8:11844116|11844357 hsa-miR-3605-5p 1 1 0
chr8:11844116|11844357 hsa-miR-3180-3p 1 0 0
chr8:11844116|11844357 hsa-miR-3126-5p 0 1 0
chr8:11844116|11844357 hsa-miR-2467-3p 1 0 0
chr8:11844116|11844357 hsa-miR-7109-5p 1 0 0
chr8:11844116|11844357 hsa-miR-185-5p 1 0 0
chr8:11844116|11844357 hsa-miR-149-3p 1 0 0
chr8:11844116|11844357 hsa-miR-6824-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6877-5p 1 0 0
chr8:11844116|11844357 hsa-miR-5010-5p 1 0 0
chr8:11844116|11844357 hsa-miR-584-3p 0 1 0
chr8:11844116|11844357 hsa-miR-214-3p 1 0 0
chr8:11844116|11844357 hsa-miR-4746-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6509-5p 1 0 0
chr8:11844116|11844357 hsa-miR-513a-5p 1 0 0
chr8:11844116|11844357 hsa-miR-1207-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4763-3p 1 0 0
chr8:11844116|11844357 hsa-miR-6816-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6870-5p 1 0 0
chr8:11844116|11844357 hsa-miR-1343-5p 1 0 0
chr8:11844116|11844357 hsa-miR-3180 1 0 0
chr8:11844116|11844357 hsa-miR-6726-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6743-5p 1 1 0
chr8:11844116|11844357 hsa-miR-6754-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6756-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6803-5p 1 0 0
chr8:11844116|11844357 hsa-miR-1249-5p 0 1 0
chr8:11844116|11844357 hsa-miR-6779-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6780a-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6797-5p 1 1 0
chr8:11844116|11844357 hsa-miR-6808-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6879-5p 1 0 0
chr8:11844116|11844357 hsa-miR-7111-5p 1 1 0
chr8:11844116|11844357 hsa-miR-4728-5p 1 0 0
chr8:11844116|11844357 hsa-miR-1237-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4632-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4649-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6729-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6794-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6795-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6858-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6883-5p 1 1 0
chr8:11844116|11844357 hsa-miR-4723-5p 1 1 0
chr8:11844116|11844357 hsa-miR-939-5p 1 0 0
chr8:11844116|11844357 hsa-miR-34b-5p 0 1 0
chr8:11844116|11844357 hsa-miR-6856-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4665-5p 0 1 0
chr8:11844116|11844357 hsa-miR-6736-5p 1 0 0
chr8:11844116|11844357 hsa-miR-3679-5p 1 0 0
chr8:11844116|11844357 hsa-miR-4716-3p 1 0 0
chr8:11844116|11844357 hsa-miR-6750-5p 1 1 0
chr8:11844116|11844357 hsa-miR-6785-5p 1 1 0
chr8:11844116|11844357 hsa-miR-4667-5p 1 0 0
chr8:11844116|11844357 hsa-miR-5591-5p 1 0 0
chr8:11844116|11844357 hsa-miR-6822-5p 1 1 0
chr8:11844116|11844357 hsa-miR-9851-3p 1 0 0
chr8:11844116|11844357 hsa-miR-3619-5p 1 0 0
chr8:11844116|11844357 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:11844116|11844357
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MLSLFVPAENHVLELHVLATLGTSS
Nucleotide Sequence CTGCTGTCTCTCTTTGTCCCTGCAGAGAATCACGTCCTGGAACTGCATGTTCTTGCGACTCTTGGGACTTCATCTTAA
CircID chr8:11844116|11844357
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPVPIKVFSNLKSTLMGSQILCHCL
Nucleotide Sequence ATGCCTGTGCCAATAAAAGTTTTCTCCAACTTGAAGTCTACTCTGATGGGATCTCAGATCCTTTGTCACTGCCTATAG
CircID chr8:11844116|11844357
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MSLQRITSWNCMFLRLLGLHLNFSLPQPCFQPWHPSPN
Nucleotide Sequence TTGTCCCTGCAGAGAATCACGTCCTGGAACTGCATGTTCTTGCGACTCTTGGGACTTCATCTTAACTTCTCGCTGCCCCAGCCATGTTTTCAACCATGGCATCCCTCCCCCAATTAG
CircID chr8:11844116|11844357
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MPWLKTWLGQREVKMKSQESQEHAVPGRDSLQGQRETAATSL
Nucleotide Sequence ATGCCATGGTTGAAAACATGGCTGGGGCAGCGAGAAGTTAAGATGAAGTCCCAAGAGTCGCAAGAACATGCAGTTCCAGGACGTGATTCTCTGCAGGGACAAAGAGAGACAGCAGCTACAAGTCTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab