CircRNA Information

General Information
circRNA Basic Information
CircID chr8:11844525|11844743
Strand +
CircType exon
Host Gene ENSG00000164733.19;
Algorism CIRI2;
Sequence CTCCAAGCAAGTAGCTTTCCACATTTGTCACAGAAATCAGAGGAGAGACGGTGTTGGGAGCCCTTTGGAGAACGCCAGTCTCCCAGGCCCCCTGCATCTATCGAGTTTGCAATGTCACAACCTCTCTGATCTTGTGCTCAGCATGATTCTTTAATAGAAGTTTTATTTTTTCGTGCACTCTGCTAATCATGTGGGTGAGCCAGTGGAACAGCGGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:11844525|11844743 hsa-miR-149-5p 0 0 1
chr8:11844525|11844743 hsa-miR-149-3p 0 0 1
chr8:11844525|11844743 hsa-miR-150-5p 0 0 1
chr8:11844525|11844743 hsa-miR-150-3p 0 0 1
chr8:11844525|11844743 hsa-miR-186-5p 0 0 1
chr8:11844525|11844743 hsa-miR-186-3p 0 0 1
chr8:11844525|11844743 hsa-miR-383-5p 0 0 1
chr8:11844525|11844743 hsa-miR-383-3p 0 0 1
chr8:11844525|11844743 hsa-miR-432-5p 0 0 1
chr8:11844525|11844743 hsa-miR-432-3p 0 0 1
chr8:11844525|11844743 hsa-miR-527 0 0 1
chr8:11844525|11844743 hsa-miR-661 0 1 1
chr8:11844525|11844743 hsa-miR-758-5p 0 0 1
chr8:11844525|11844743 hsa-miR-758-3p 0 0 1
chr8:11844525|11844743 hsa-miR-892b 0 1 1
chr8:11844525|11844743 hsa-miR-548e-5p 0 0 1
chr8:11844525|11844743 hsa-miR-548e-3p 0 0 1
chr8:11844525|11844743 hsa-miR-518a-5p 0 0 1
chr8:11844525|11844743 hsa-miR-515-5p 0 0 1
chr8:11844525|11844743 hsa-miR-548a-3p 0 0 1
chr8:11844525|11844743 hsa-miR-542-3p 0 0 1
chr8:11844525|11844743 hsa-miR-548f 0 0 1
chr8:11844525|11844743 hsa-miR-24 0 0 1
chr8:11844525|11844743 hsa-miR-759 0 1 0
chr8:11844525|11844743 hsa-miR-2861 0 1 0
chr8:11844525|11844743 hsa-miR-3689c 1 0 0
chr8:11844525|11844743 hsa-miR-3978 0 1 0
chr8:11844525|11844743 hsa-miR-4739 1 0 0
chr8:11844525|11844743 hsa-miR-6086 0 1 0
chr8:11844525|11844743 hsa-miR-6799-5p 1 0 0
chr8:11844525|11844743 hsa-miR-7851-3p 0 1 0
chr8:11844525|11844743 hsa-miR-3192-5p 0 1 0
chr8:11844525|11844743 hsa-miR-6732-5p 1 0 0
chr8:11844525|11844743 hsa-miR-6798-5p 0 1 0
chr8:11844525|11844743 hsa-miR-4640-5p 1 0 0
chr8:11844525|11844743 hsa-miR-30c-2-3p 0 1 0
chr8:11844525|11844743 hsa-miR-5580-5p 0 1 0
chr8:11844525|11844743 hsa-miR-6780a-3p 0 1 0
chr8:11844525|11844743 hsa-miR-873-3p 0 1 0
chr8:11844525|11844743 hsa-miR-519d-5p 0 1 0
chr8:11844525|11844743 hsa-miR-6509-3p 0 1 0
chr8:11844525|11844743 hsa-miR-1207-5p 0 1 0
chr8:11844525|11844743 hsa-miR-3689b-3p 1 0 0
chr8:11844525|11844743 hsa-miR-6752-5p 1 0 0
chr8:11844525|11844743 hsa-miR-6722-3p 0 1 0
chr8:11844525|11844743 hsa-miR-1909-3p 1 1 0
chr8:11844525|11844743 hsa-miR-328-5p 1 0 0
chr8:11844525|11844743 hsa-miR-30c-1-3p 0 1 0
chr8:11844525|11844743 hsa-miR-6827-3p 0 1 0
chr8:11844525|11844743 hsa-miR-7156-5p 0 1 0
chr8:11844525|11844743 hsa-miR-519e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:11844525|11844743
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MSQKSEERRCWEPFGERQSPRPPASIEFAMSQPL
Nucleotide Sequence TTGTCACAGAAATCAGAGGAGAGACGGTGTTGGGAGCCCTTTGGAGAACGCCAGTCTCCCAGGCCCCCTGCATCTATCGAGTTTGCAATGTCACAACCTCTCTGA
CircID chr8:11844525|11844743
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MENASLPGPLHLSSLQCHNLSDLVLSMIL
Nucleotide Sequence TTGGAGAACGCCAGTCTCCCAGGCCCCCTGCATCTATCGAGTTTGCAATGTCACAACCTCTCTGATCTTGTGCTCAGCATGATTCTTTAA
CircID chr8:11844525|11844743
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MGALWRTPVSQAPCIYRVCNVTTSLILCSA
Nucleotide Sequence TTGGGAGCCCTTTGGAGAACGCCAGTCTCCCAGGCCCCCTGCATCTATCGAGTTTGCAATGTCACAACCTCTCTGATCTTGTGCTCAGCATGA
CircID chr8:11844525|11844743
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MGDWRSPKGSQHRLSSDFCDKCGKLLAW
Nucleotide Sequence CTGGGAGACTGGCGTTCTCCAAAGGGCTCCCAACACCGTCTCTCCTCTGATTTCTGTGACAAATGTGGAAAGCTACTTGCTTGG
CircID chr8:11844525|11844743
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MFHWLTHMISRVHEKIKLLLKNHAEHKIREVVTLQTR
Nucleotide Sequence CTGTTCCACTGGCTCACCCACATGATTAGCAGAGTGCACGAAAAAATAAAACTTCTATTAAAGAATCATGCTGAGCACAAGATCAGAGAGGTTGTGACATTGCAAACTCGATAG
CircID chr8:11844525|11844743
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MQGAWETGVLQRAPNTVSPLISVTNVESYLLG
Nucleotide Sequence ATGCAGGGGGCCTGGGAGACTGGCGTTCTCCAAAGGGCTCCCAACACCGTCTCTCCTCTGATTTCTGTGACAAATGTGGAAAGCTACTTGCTTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab