CircRNA Information

General Information
circRNA Basic Information
CircID chr8:123195167|123195285
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACCCCCTGGAAACCTGCCTTCCACTCCCAGCTTATCCCAATGTTTGTGCTCATATTTCACTGGTCACTACTATGTGTTTGCAGCAGAGGAAGCAAGAAAAGATGTAACCAGTTGCCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:123195167|123195285 hsa-miR-578 0 0 1
chr8:123195167|123195285 hsa-miR-657 0 0 1
chr8:123195167|123195285 hsa-miR-940 0 0 1
chr8:123195167|123195285 hsa-miR-409-5p 0 0 1
chr8:123195167|123195285 hsa-miR-1244 0 0 1
chr8:123195167|123195285 hsa-miR-556-5p 0 0 1
chr8:123195167|123195285 hsa-miR-769-3p 0 0 1
chr8:123195167|123195285 hsa-miR-450b-3p 0 0 1
chr8:123195167|123195285 hsa-miR-582-3p 0 0 1
chr8:123195167|123195285 hsa-miR-516a-3p 0 0 1
chr8:123195167|123195285 hsa-miR-325 0 1 0
chr8:123195167|123195285 hsa-miR-608 1 0 0
chr8:123195167|123195285 hsa-miR-646 1 0 0
chr8:123195167|123195285 hsa-miR-298 1 0 0
chr8:123195167|123195285 hsa-miR-1268a 1 0 0
chr8:123195167|123195285 hsa-miR-3138 1 0 0
chr8:123195167|123195285 hsa-miR-320e 1 0 0
chr8:123195167|123195285 hsa-miR-3714 1 0 0
chr8:123195167|123195285 hsa-miR-1268b 1 0 0
chr8:123195167|123195285 hsa-miR-4429 1 0 0
chr8:123195167|123195285 hsa-miR-4487 1 0 0
chr8:123195167|123195285 hsa-miR-2392 1 0 0
chr8:123195167|123195285 hsa-miR-4533 1 0 0
chr8:123195167|123195285 hsa-miR-3978 1 0 0
chr8:123195167|123195285 hsa-miR-4651 1 0 0
chr8:123195167|123195285 hsa-miR-4736 0 1 0
chr8:123195167|123195285 hsa-miR-5787 1 0 0
chr8:123195167|123195285 hsa-miR-6071 0 1 0
chr8:123195167|123195285 hsa-miR-6125 1 0 0
chr8:123195167|123195285 hsa-miR-6133 1 0 0
chr8:123195167|123195285 hsa-miR-6745 1 0 0
chr8:123195167|123195285 hsa-miR-4433b-3p 1 0 0
chr8:123195167|123195285 hsa-miR-504-3p 1 1 0
chr8:123195167|123195285 hsa-miR-6728-5p 1 0 0
chr8:123195167|123195285 hsa-miR-3192-5p 0 1 0
chr8:123195167|123195285 hsa-miR-6716-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6871-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6732-5p 1 0 0
chr8:123195167|123195285 hsa-miR-3190-3p 1 1 0
chr8:123195167|123195285 hsa-miR-6881-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6782-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6810-5p 1 0 0
chr8:123195167|123195285 hsa-miR-1226-5p 1 0 0
chr8:123195167|123195285 hsa-miR-4787-5p 1 0 0
chr8:123195167|123195285 hsa-miR-149-3p 1 0 0
chr8:123195167|123195285 hsa-miR-3162-5p 1 0 0
chr8:123195167|123195285 hsa-miR-1207-5p 1 0 0
chr8:123195167|123195285 hsa-miR-1233-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6778-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6893-5p 0 1 0
chr8:123195167|123195285 hsa-miR-6737-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6752-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6803-5p 1 1 0
chr8:123195167|123195285 hsa-miR-6819-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6842-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6851-5p 1 0 0
chr8:123195167|123195285 hsa-miR-7110-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6751-5p 1 1 0
chr8:123195167|123195285 hsa-miR-6763-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6797-5p 1 0 0
chr8:123195167|123195285 hsa-miR-7111-5p 1 0 0
chr8:123195167|123195285 hsa-miR-4728-5p 1 0 0
chr8:123195167|123195285 hsa-miR-5189-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6780b-5p 1 0 0
chr8:123195167|123195285 hsa-miR-4632-5p 1 0 0
chr8:123195167|123195285 hsa-miR-4725-3p 1 0 0
chr8:123195167|123195285 hsa-miR-4745-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6735-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6777-5p 1 0 0
chr8:123195167|123195285 hsa-miR-6794-5p 1 0 0
chr8:123195167|123195285 hsa-miR-7843-5p 1 0 0
chr8:123195167|123195285 hsa-miR-320a-3p 1 0 0
chr8:123195167|123195285 hsa-miR-320b 1 0 0
chr8:123195167|123195285 hsa-miR-320c 1 0 0
chr8:123195167|123195285 hsa-miR-3059-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:123195167|123195285
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MFVLIFHWSLLCVCSRGSKKRCNQLP
Nucleotide Sequence ATGTTTGTGCTCATATTTCACTGGTCACTACTATGTGTTTGCAGCAGAGGAAGCAAGAAAAGATGTAACCAGTTGCCC
CircID chr8:123195167|123195285
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPSTPSLSQCLCSYFTGHYYVFAAEEARKDVTSCP
Nucleotide Sequence CTGCCTTCCACTCCCAGCTTATCCCAATGTTTGTGCTCATATTTCACTGGTCACTACTATGTGTTTGCAGCAGAGGAAGCAAGAAAAGATGTAACCAGTTGCCCT
CircID chr8:123195167|123195285
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence METCLPLPAYPNVCAHISLVTTMCLQQRKQEKM
Nucleotide Sequence CTGGAAACCTGCCTTCCACTCCCAGCTTATCCCAATGTTTGTGCTCATATTTCACTGGTCACTACTATGTGTTTGCAGCAGAGGAAGCAAGAAAAGATGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab