CircRNA Information

General Information
circRNA Basic Information
CircID chr8:124543089|124543283
Strand +
CircType exon
Host Gene ENSG00000147684.6;
Algorism CIRI2;
Sequence CTACCTTGTAGCAATCGTATCTCTCATAGGAGGTGCCCCCAGGAGAGTCAGGGAAGATGTATGGCTGTGGATGCTGACGGTACCAGAATTCTTCCTCGGCCTCCTTCAGCAGCTGGGTGGCCTTCGCCATATCCTTTTCATTCTTATGTTCTTCAAACCGGGCTCTCATCAAACAAGCAAAGTATCGGTATTTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:124543089|124543283 hsa-miR-221-5p 0 0 1
chr8:124543089|124543283 hsa-miR-221-3p 0 0 1
chr8:124543089|124543283 hsa-miR-222-5p 0 0 1
chr8:124543089|124543283 hsa-miR-222-3p 0 0 1
chr8:124543089|124543283 hsa-miR-345-5p 0 0 1
chr8:124543089|124543283 hsa-miR-345-3p 0 0 1
chr8:124543089|124543283 hsa-miR-624-5p 0 0 1
chr8:124543089|124543283 hsa-miR-624-3p 0 0 1
chr8:124543089|124543283 hsa-miR-637 0 0 1
chr8:124543089|124543283 hsa-miR-652-5p 0 0 1
chr8:124543089|124543283 hsa-miR-652-3p 0 0 1
chr8:124543089|124543283 hsa-miR-1263 0 1 1
chr8:124543089|124543283 hsa-miR-1252-5p 0 0 1
chr8:124543089|124543283 hsa-miR-1252-3p 0 0 1
chr8:124543089|124543283 hsa-miR-125a-5p 0 0 1
chr8:124543089|124543283 hsa-miR-1274a 0 0 1
chr8:124543089|124543283 hsa-miR-125b 0 0 1
chr8:124543089|124543283 hsa-miR-3185 1 0 0
chr8:124543089|124543283 hsa-miR-3651 1 0 0
chr8:124543089|124543283 hsa-miR-3916 0 1 0
chr8:124543089|124543283 hsa-miR-4476 0 1 0
chr8:124543089|124543283 hsa-miR-4493 0 1 0
chr8:124543089|124543283 hsa-miR-4730 0 1 0
chr8:124543089|124543283 hsa-miR-6126 1 0 0
chr8:124543089|124543283 hsa-miR-12118 0 1 0
chr8:124543089|124543283 hsa-miR-671-5p 1 0 0
chr8:124543089|124543283 hsa-miR-218-1-3p 1 0 0
chr8:124543089|124543283 hsa-miR-6089 1 1 0
chr8:124543089|124543283 hsa-miR-6880-5p 1 0 0
chr8:124543089|124543283 hsa-miR-4695-5p 0 1 0
chr8:124543089|124543283 hsa-miR-423-3p 1 0 0
chr8:124543089|124543283 hsa-miR-6871-5p 1 0 0
chr8:124543089|124543283 hsa-miR-6827-5p 1 0 0
chr8:124543089|124543283 hsa-miR-1343-3p 0 1 0
chr8:124543089|124543283 hsa-miR-887-5p 1 0 0
chr8:124543089|124543283 hsa-miR-3145-3p 0 1 0
chr8:124543089|124543283 hsa-miR-4732-3p 0 1 0
chr8:124543089|124543283 hsa-miR-3124-3p 0 1 0
chr8:124543089|124543283 hsa-miR-541-5p 1 1 0
chr8:124543089|124543283 hsa-miR-6734-3p 0 1 0
chr8:124543089|124543283 hsa-miR-1233-5p 1 0 0
chr8:124543089|124543283 hsa-miR-4763-3p 1 0 0
chr8:124543089|124543283 hsa-miR-6780b-5p 1 0 0
chr8:124543089|124543283 hsa-miR-10526-3p 1 0 0
chr8:124543089|124543283 hsa-miR-6729-5p 1 0 0
chr8:124543089|124543283 hsa-miR-6795-5p 1 0 0
chr8:124543089|124543283 hsa-miR-10394-3p 1 0 0
chr8:124543089|124543283 hsa-miR-3679-5p 1 1 0
chr8:124543089|124543283 hsa-miR-6891-5p 0 1 0
chr8:124543089|124543283 hsa-miR-6724-5p 1 0 0
chr8:124543089|124543283 hsa-miR-6859-5p 1 0 0
chr8:124543089|124543283 hsa-miR-6783-3p 0 1 0
chr8:124543089|124543283 hsa-miR-10522-5p 1 0 0
chr8:124543089|124543283 hsa-miR-10393-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:124543089|124543283
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MAVDADGTRILPRPPSAAGWPSPYPFHSYVLQTGLSSNKQSIGIC
Nucleotide Sequence ATGGCTGTGGATGCTGACGGTACCAGAATTCTTCCTCGGCCTCCTTCAGCAGCTGGGTGGCCTTCGCCATATCCTTTTCATTCTTATGTTCTTCAAACCGGGCTCTCATCAAACAAGCAAAGTATCGGTATTTGT
CircID chr8:124543089|124543283
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MWMLTVPEFFLGLLQQLGGLRHILFILMFFKPGSHQTSKVSVF
Nucleotide Sequence CTGTGGATGCTGACGGTACCAGAATTCTTCCTCGGCCTCCTTCAGCAGCTGGGTGGCCTTCGCCATATCCTTTTCATTCTTATGTTCTTCAAACCGGGCTCTCATCAAACAAGCAAAGTATCGGTATTT
CircID chr8:124543089|124543283
ORF Type ORF3
Protein Length 57
Nucleotide Length 171
Protein Sequence MMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKV
Nucleotide Sequence TTGATGAGAGCCCGGTTTGAAGAACATAAGAATGAAAAGGATATGGCGAAGGCCACCCAGCTGCTGAAGGAGGCCGAGGAAGAATTCTGGTACCGTCAGCATCCACAGCCATACATCTTCCCTGACTCTCCTGGGGGCACCTCCTATGAGAGATACGATTGCTACAAGGTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab