CircRNA Information

General Information
circRNA Basic Information
CircID chr8:128049490|128049706
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGGGCTGGGCCATTGGAGTGGTGGGTGCTGGGGAGCTTCCGTGGGCCCCTCCAGGTCCACTCCTTGCTCTTCTCTGCCTTGTTTTGTGCCCAGAAGGCTGACCTGTGTGGATGCATTATCAGGGTGGATGCAACACAGGGCTGCCATGCTCTCTGGTATCAGTTTGGAAGGCACTGGCAGGATGGGAAGGCAGGCGGGGAGTGAGGTCAGGGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:128049490|128049706 hsa-miR-492 0 0 1
chr8:128049490|128049706 hsa-miR-519e-5p 0 0 1
chr8:128049490|128049706 hsa-miR-519e-3p 0 0 1
chr8:128049490|128049706 hsa-miR-612 1 0 1
chr8:128049490|128049706 hsa-miR-619-5p 0 0 1
chr8:128049490|128049706 hsa-miR-619-3p 0 0 1
chr8:128049490|128049706 hsa-miR-631 0 0 1
chr8:128049490|128049706 hsa-miR-1237-5p 0 0 1
chr8:128049490|128049706 hsa-miR-1237-3p 0 0 1
chr8:128049490|128049706 hsa-miR-1253 0 0 1
chr8:128049490|128049706 hsa-miR-1825 0 0 1
chr8:128049490|128049706 hsa-miR-885-3p 0 0 1
chr8:128049490|128049706 hsa-miR-324-5p 0 0 1
chr8:128049490|128049706 hsa-miR-146b-3p 0 0 1
chr8:128049490|128049706 hsa-miR-423-5p 0 0 1
chr8:128049490|128049706 hsa-miR-483-3p 1 0 1
chr8:128049490|128049706 hsa-miR-515-3p 0 0 1
chr8:128049490|128049706 hsa-miR-1285 0 0 1
chr8:128049490|128049706 hsa-miR-346 1 0 0
chr8:128049490|128049706 hsa-miR-662 1 0 0
chr8:128049490|128049706 hsa-miR-663a 1 0 0
chr8:128049490|128049706 hsa-miR-1200 1 0 0
chr8:128049490|128049706 hsa-miR-1976 1 0 0
chr8:128049490|128049706 hsa-miR-3147 1 0 0
chr8:128049490|128049706 hsa-miR-3972 1 0 0
chr8:128049490|128049706 hsa-miR-4739 1 0 0
chr8:128049490|128049706 hsa-miR-4780 1 0 0
chr8:128049490|128049706 hsa-miR-6860 1 0 0
chr8:128049490|128049706 hsa-miR-8073 1 0 0
chr8:128049490|128049706 hsa-miR-8089 1 0 0
chr8:128049490|128049706 hsa-miR-370-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6749-3p 1 0 0
chr8:128049490|128049706 hsa-miR-214-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6747-3p 1 0 0
chr8:128049490|128049706 hsa-miR-149-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6762-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6727-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6849-3p 1 0 0
chr8:128049490|128049706 hsa-miR-7110-3p 1 0 0
chr8:128049490|128049706 hsa-miR-1915-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6845-3p 1 0 0
chr8:128049490|128049706 hsa-miR-4793-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4763-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6763-3p 1 0 0
chr8:128049490|128049706 hsa-miR-7108-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6894-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6803-3p 1 0 0
chr8:128049490|128049706 hsa-miR-5001-3p 1 0 0
chr8:128049490|128049706 hsa-miR-7113-3p 1 0 0
chr8:128049490|128049706 hsa-miR-3667-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6821-3p 1 0 0
chr8:128049490|128049706 hsa-miR-378a-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4640-3p 1 0 0
chr8:128049490|128049706 hsa-miR-1306-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6825-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6870-3p 1 0 0
chr8:128049490|128049706 hsa-miR-1236-3p 1 0 0
chr8:128049490|128049706 hsa-miR-3120-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4695-3p 1 0 0
chr8:128049490|128049706 hsa-miR-4732-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6752-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6758-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6777-3p 1 0 0
chr8:128049490|128049706 hsa-miR-1292-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6794-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6760-3p 1 0 0
chr8:128049490|128049706 hsa-miR-3670 1 0 0
chr8:128049490|128049706 hsa-miR-4750-3p 1 0 0
chr8:128049490|128049706 hsa-miR-3173-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4639-3p 1 0 0
chr8:128049490|128049706 hsa-miR-4727-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4485-5p 1 0 0
chr8:128049490|128049706 hsa-miR-1207-5p 1 0 0
chr8:128049490|128049706 hsa-miR-6774-5p 1 0 0
chr8:128049490|128049706 hsa-miR-3127-3p 1 0 0
chr8:128049490|128049706 hsa-miR-320a-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4685-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6754-3p 1 0 0
chr8:128049490|128049706 hsa-miR-5189-5p 1 0 0
chr8:128049490|128049706 hsa-miR-328-5p 1 0 0
chr8:128049490|128049706 hsa-miR-3187-5p 1 0 0
chr8:128049490|128049706 hsa-miR-3085-5p 1 0 0
chr8:128049490|128049706 hsa-miR-1285-3p 1 0 0
chr8:128049490|128049706 hsa-miR-1271-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6762-5p 1 0 0
chr8:128049490|128049706 hsa-miR-4722-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6784-3p 1 0 0
chr8:128049490|128049706 hsa-miR-10401-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6801-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6810-3p 1 0 0
chr8:128049490|128049706 hsa-miR-11181-5p 1 0 0
chr8:128049490|128049706 hsa-miR-3622a-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6744-3p 1 0 0
chr8:128049490|128049706 hsa-miR-33b-3p 1 0 0
chr8:128049490|128049706 hsa-miR-5699-3p 1 0 0
chr8:128049490|128049706 hsa-miR-6820-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:128049490|128049706
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MGHWSGGCWGASVGPSRSTPCSSLPCFVPRRLTCVDALSGWMQHRAAMLSGISLEGTGRMGRQAGSEVRG
Nucleotide Sequence CTGGGCCATTGGAGTGGTGGGTGCTGGGGAGCTTCCGTGGGCCCCTCCAGGTCCACTCCTTGCTCTTCTCTGCCTTGTTTTGTGCCCAGAAGGCTGACCTGTGTGGATGCATTATCAGGGTGGATGCAACACAGGGCTGCCATGCTCTCTGGTATCAGTTTGGAAGGCACTGGCAGGATGGGAAGGCAGGCGGGGAGTGAGGTCAGGGGG
CircID chr8:128049490|128049706
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MHYQGGCNTGLPCSLVSVWKALAGWEGRRGVRSGG
Nucleotide Sequence ATGCATTATCAGGGTGGATGCAACACAGGGCTGCCATGCTCTCTGGTATCAGTTTGGAAGGCACTGGCAGGATGGGAAGGCAGGCGGGGAGTGAGGTCAGGGGGC
CircID chr8:128049490|128049706
ORF Type ORF3
Protein Length 63
Nucleotide Length 192
Protein Sequence MEWWVLGSFRGPLQVHSLLFSALFCAQKADLCGCIIRVDATQGCHALWYQFGRHWQDGKAGGE
Nucleotide Sequence TTGGAGTGGTGGGTGCTGGGGAGCTTCCGTGGGCCCCTCCAGGTCCACTCCTTGCTCTTCTCTGCCTTGTTTTGTGCCCAGAAGGCTGACCTGTGTGGATGCATTATCAGGGTGGATGCAACACAGGGCTGCCATGCTCTCTGGTATCAGTTTGGAAGGCACTGGCAGGATGGGAAGGCAGGCGGGGAGTGA
CircID chr8:128049490|128049706
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MIMHPHRSAFWAQNKAEKSKEWTWRGPRKLPSTHHSNGPAP
Nucleotide Sequence CTGATAATGCATCCACACAGGTCAGCCTTCTGGGCACAAAACAAGGCAGAGAAGAGCAAGGAGTGGACCTGGAGGGGCCCACGGAAGCTCCCCAGCACCCACCACTCCAATGGCCCAGCCCCT
CircID chr8:128049490|128049706
ORF Type ORF5
Protein Length 70
Nucleotide Length 210
Protein Sequence MTSLPACLPILPVPSKLIPESMAALCCIHPDNASTQVSLLGTKQGREEQGVDLEGPTEAPQHPPLQWPSP
Nucleotide Sequence CTGACCTCACTCCCCGCCTGCCTTCCCATCCTGCCAGTGCCTTCCAAACTGATACCAGAGAGCATGGCAGCCCTGTGTTGCATCCACCCTGATAATGCATCCACACAGGTCAGCCTTCTGGGCACAAAACAAGGCAGAGAAGAGCAAGGAGTGGACCTGGAGGGGCCCACGGAAGCTCCCCAGCACCCACCACTCCAATGGCCCAGCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab