CircRNA Information

General Information
circRNA Basic Information
CircID chr8:130052825|130053067
Strand +
CircType exon
Host Gene ENSG00000153317.13;
Algorism CIRI2;
Sequence CTTGCATGACAAACCTGCAAAATATTTTATCAGCTGTTATTGGAAAGTGATTTTAAGCAATTGCTTCCTCAGTGTCAGGGCACATGTGAATTTCCACACCAAACAGAGCATGAGGAACCAGTTGACATGCTGGGTTGTGACTGGCAGCTTTAGCAGCCTCGGTACTGAAGCCACACCAGTGTCCGGATGGAAGTCTGCATCTGAGGTTGCTCAGTGTCCCGGTCATTCATTTACACATTTTAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:130052825|130053067 hsa-miR-22-5p 0 0 1
chr8:130052825|130053067 hsa-miR-22-3p 0 0 1
chr8:130052825|130053067 hsa-miR-23a-5p 0 0 1
chr8:130052825|130053067 hsa-miR-23a-3p 0 0 1
chr8:130052825|130053067 hsa-miR-23b-5p 0 0 1
chr8:130052825|130053067 hsa-miR-23b-3p 0 0 1
chr8:130052825|130053067 hsa-miR-320a-5p 0 0 1
chr8:130052825|130053067 hsa-miR-320a-3p 0 0 1
chr8:130052825|130053067 hsa-miR-34b-5p 0 0 1
chr8:130052825|130053067 hsa-miR-34b-3p 0 0 1
chr8:130052825|130053067 hsa-miR-505-5p 0 0 1
chr8:130052825|130053067 hsa-miR-505-3p 0 0 1
chr8:130052825|130053067 hsa-miR-507 0 0 1
chr8:130052825|130053067 hsa-miR-557 0 0 1
chr8:130052825|130053067 hsa-miR-617 -8 1 1
chr8:130052825|130053067 hsa-miR-657 -7 0 1
chr8:130052825|130053067 hsa-miR-874-5p 0 0 1
chr8:130052825|130053067 hsa-miR-874-3p 0 0 1
chr8:130052825|130053067 hsa-miR-302f -4 0 1
chr8:130052825|130053067 hsa-miR-485-5p 0 0 1
chr8:130052825|130053067 hsa-miR-146b-3p 0 0 1
chr8:130052825|130053067 hsa-miR-455-5p 0 1 1
chr8:130052825|130053067 hsa-miR-338-3p -3 0 1
chr8:130052825|130053067 hsa-miR-320b -3 0 1
chr8:130052825|130053067 hsa-miR-320c 0 0 1
chr8:130052825|130053067 hsa-miR-320d 0 0 1
chr8:130052825|130053067 hsa-miR-582-3p -4 0 1
chr8:130052825|130053067 hsa-miR-450b-5p -3 0 1
chr8:130052825|130053067 hsa-miR-644 0 0 1
chr8:130052825|130053067 hsa-miR-548l -13 1 0
chr8:130052825|130053067 hsa-miR-4330 0 1 0
chr8:130052825|130053067 hsa-miR-5683 -5 1 0
chr8:130052825|130053067 hsa-miR-7976 -6 1 0
chr8:130052825|130053067 hsa-miR-29b-1-5p -8 1 0
chr8:130052825|130053067 hsa-miR-29b-2-5p -5 1 0
chr8:130052825|130053067 hsa-miR-1236-5p -7 1 0
chr8:130052825|130053067 hsa-miR-4474-3p -6 1 0
chr8:130052825|130053067 hsa-miR-3145-3p -7 1 0
chr8:130052825|130053067 hsa-miR-19b-1-5p -17 1 0
chr8:130052825|130053067 hsa-miR-6884-5p -6 1 0
chr8:130052825|130053067 hsa-miR-19b-2-5p -15 1 0
chr8:130052825|130053067 hsa-miR-4670-5p -6 1 0
chr8:130052825|130053067 hsa-miR-4704-3p -8 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:130052825|130053067
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MLLESDFKQLLPQCQGTCEFPHQTEHEEPVDMLGCDWQL
Nucleotide Sequence CTGTTATTGGAAAGTGATTTTAAGCAATTGCTTCCTCAGTGTCAGGGCACATGTGAATTTCCACACCAAACAGAGCATGAGGAACCAGTTGACATGCTGGGTTGTGACTGGCAGCTTTAG
CircID chr8:130052825|130053067
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence LHDKPAKYFISCYWKVILSNCFLSVRAHVNFHTKQSMRNQLTCWVVTGSFSSLGTEATPVSGWKSASEVAQCPGHSFTHF
Nucleotide Sequence TTGCATGACAAACCTGCAAAATATTTTATCAGCTGTTATTGGAAAGTGATTTTAAGCAATTGCTTCCTCAGTGTCAGGGCACATGTGAATTTCCACACCAAACAGAGCATGAGGAACCAGTTGACATGCTGGGTTGTGACTGGCAGCTTTAGCAGCCTCGGTACTGAAGCCACACCAGTGTCCGGATGGAAGTCTGCATCTGAGGTTGCTCAGTGTCCCGGTCATTCATTTACACATTTT
CircID chr8:130052825|130053067
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MAALAASVLKPHQCPDGSLHLRLLSVPVIHLHIL
Nucleotide Sequence CTGGCAGCTTTAGCAGCCTCGGTACTGAAGCCACACCAGTGTCCGGATGGAAGTCTGCATCTGAGGTTGCTCAGTGTCCCGGTCATTCATTTACACATTTTA
CircID chr8:130052825|130053067
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MLKLPVTTQHVNWFLMLCLVWKFTCALTLRKQLLKITFQ
Nucleotide Sequence CTGCTAAAGCTGCCAGTCACAACCCAGCATGTCAACTGGTTCCTCATGCTCTGTTTGGTGTGGAAATTCACATGTGCCCTGACACTGAGGAAGCAATTGCTTAAAATCACTTTCCAATAA
CircID chr8:130052825|130053067
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MNDRDTEQPQMQTSIRTLVWLQYRGC
Nucleotide Sequence ATGAATGACCGGGACACTGAGCAACCTCAGATGCAGACTTCCATCCGGACACTGGTGTGGCTTCAGTACCGAGGCTGCTAA
CircID chr8:130052825|130053067
ORF Type ORF6
Protein Length 57
Nucleotide Length 174
Protein Sequence MTGTLSNLRCRLPSGHWCGFSTEAAKAASHNPACQLVPHALFGVEIHMCPDTEEAIA
Nucleotide Sequence ATGACCGGGACACTGAGCAACCTCAGATGCAGACTTCCATCCGGACACTGGTGTGGCTTCAGTACCGAGGCTGCTAAAGCTGCCAGTCACAACCCAGCATGTCAACTGGTTCCTCATGCTCTGTTTGGTGTGGAAATTCACATGTGCCCTGACACTGAGGAAGCAATTGCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab