CircRNA Information

General Information
circRNA Basic Information
CircID chr8:130179264|130180880
Strand -
CircType exon
Host Gene ENSG00000153317.14;
Algorism find_circ;CIRI2;DCC;
Sequence TACAAAAATTGAGAAAGAGAAAAGAGAGCACGCAAAACAACATGGGATGATCCGCACAGAGATAACAGGAGCTGAGATTGCGGAAGAAATGGAGAAGGAAAGGCGCCTCTTTCAGCTCCAAATGTGTGAATATCTCATTAAAGTTAATGAAATCAAGACCAAAAAGGGTGTGGATCTGCTGCAGAATCTTATAAAGTATTACCATGCACAGTGCAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:130179264|130180880 hsa-miR-148a-5p 0 0 1
chr8:130179264|130180880 hsa-miR-148a-3p 0 0 1
chr8:130179264|130180880 hsa-miR-130a-5p 0 0 1
chr8:130179264|130180880 hsa-miR-130a-3p 0 0 1
chr8:130179264|130180880 hsa-miR-152-5p 0 0 1
chr8:130179264|130180880 hsa-miR-152-3p 0 0 1
chr8:130179264|130180880 hsa-miR-301a-5p 0 0 1
chr8:130179264|130180880 hsa-miR-301a-3p 0 0 1
chr8:130179264|130180880 hsa-miR-130b-5p 0 0 1
chr8:130179264|130180880 hsa-miR-130b-3p 0 0 1
chr8:130179264|130180880 hsa-miR-340-5p 0 0 1
chr8:130179264|130180880 hsa-miR-340-3p 0 0 1
chr8:130179264|130180880 hsa-miR-148b-5p 0 0 1
chr8:130179264|130180880 hsa-miR-148b-3p 0 0 1
chr8:130179264|130180880 hsa-miR-539-5p 0 0 1
chr8:130179264|130180880 hsa-miR-539-3p 0 0 1
chr8:130179264|130180880 hsa-miR-559 0 0 1
chr8:130179264|130180880 hsa-miR-561-5p 0 0 1
chr8:130179264|130180880 hsa-miR-561-3p 0 0 1
chr8:130179264|130180880 hsa-miR-569 0 0 1
chr8:130179264|130180880 hsa-miR-580-5p 0 0 1
chr8:130179264|130180880 hsa-miR-580-3p 0 0 1
chr8:130179264|130180880 hsa-miR-454-5p 0 0 1
chr8:130179264|130180880 hsa-miR-454-3p 0 0 1
chr8:130179264|130180880 hsa-miR-298 0 0 1
chr8:130179264|130180880 hsa-miR-708-5p 0 0 1
chr8:130179264|130180880 hsa-miR-708-3p 0 0 1
chr8:130179264|130180880 hsa-miR-301b-5p 0 0 1
chr8:130179264|130180880 hsa-miR-301b-3p 0 0 1
chr8:130179264|130180880 hsa-miR-548j-5p 0 0 1
chr8:130179264|130180880 hsa-miR-548j-3p 0 0 1
chr8:130179264|130180880 hsa-miR-548k 0 0 1
chr8:130179264|130180880 hsa-miR-548l 0 0 1
chr8:130179264|130180880 hsa-miR-1257 0 0 1
chr8:130179264|130180880 hsa-miR-1252-5p 0 0 1
chr8:130179264|130180880 hsa-miR-1252-3p 0 0 1
chr8:130179264|130180880 hsa-miR-142-5p 0 0 1
chr8:130179264|130180880 hsa-miR-566 0 0 1
chr8:130179264|130180880 hsa-miR-28-5p 0 0 1
chr8:130179264|130180880 hsa-miR-548b-5p 0 0 1
chr8:130179264|130180880 hsa-miR-548d-5p 0 0 1
chr8:130179264|130180880 hsa-miR-524-3p 0 1 1
chr8:130179264|130180880 hsa-miR-525-3p 0 1 1
chr8:130179264|130180880 hsa-miR-556-3p 0 0 1
chr8:130179264|130180880 hsa-miR-548c-5p 0 0 1
chr8:130179264|130180880 hsa-miR-548a-5p 0 0 1
chr8:130179264|130180880 hsa-miR-548i 0 0 1
chr8:130179264|130180880 hsa-miR-128 0 0 1
chr8:130179264|130180880 hsa-miR-1300 0 0 1
chr8:130179264|130180880 hsa-miR-548h 0 0 1
chr8:130179264|130180880 hsa-miR-638 1 0 0
chr8:130179264|130180880 hsa-miR-658 1 0 0
chr8:130179264|130180880 hsa-miR-3153 1 1 0
chr8:130179264|130180880 hsa-miR-3185 1 0 0
chr8:130179264|130180880 hsa-miR-4298 1 0 0
chr8:130179264|130180880 hsa-miR-4311 0 1 0
chr8:130179264|130180880 hsa-miR-4271 0 1 0
chr8:130179264|130180880 hsa-miR-3911 1 1 0
chr8:130179264|130180880 hsa-miR-4476 1 0 0
chr8:130179264|130180880 hsa-miR-4516 0 1 0
chr8:130179264|130180880 hsa-miR-4518 1 0 0
chr8:130179264|130180880 hsa-miR-4527 0 1 0
chr8:130179264|130180880 hsa-miR-4531 0 1 0
chr8:130179264|130180880 hsa-miR-4644 1 1 0
chr8:130179264|130180880 hsa-miR-4656 1 0 0
chr8:130179264|130180880 hsa-miR-4657 1 0 0
chr8:130179264|130180880 hsa-miR-4739 1 0 0
chr8:130179264|130180880 hsa-miR-4752 0 1 0
chr8:130179264|130180880 hsa-miR-6085 1 0 0
chr8:130179264|130180880 hsa-miR-6088 1 0 0
chr8:130179264|130180880 hsa-miR-6124 1 0 0
chr8:130179264|130180880 hsa-miR-6165 1 0 0
chr8:130179264|130180880 hsa-miR-6863 1 0 0
chr8:130179264|130180880 hsa-miR-12115 1 0 0
chr8:130179264|130180880 hsa-miR-12128 1 0 0
chr8:130179264|130180880 hsa-miR-92a-2-5p 1 1 0
chr8:130179264|130180880 hsa-miR-6747-5p 1 1 0
chr8:130179264|130180880 hsa-miR-6728-5p 1 1 0
chr8:130179264|130180880 hsa-miR-6833-5p 1 1 0
chr8:130179264|130180880 hsa-miR-5187-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6746-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6760-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6514-5p 1 0 0
chr8:130179264|130180880 hsa-miR-1226-5p 1 0 0
chr8:130179264|130180880 hsa-miR-3160-3p 0 1 0
chr8:130179264|130180880 hsa-miR-6812-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6726-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6737-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6813-5p 1 1 0
chr8:130179264|130180880 hsa-miR-6819-5p 1 0 0
chr8:130179264|130180880 hsa-miR-675-5p 1 0 0
chr8:130179264|130180880 hsa-miR-939-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6739-5p 1 1 0
chr8:130179264|130180880 hsa-miR-3679-5p 1 0 0
chr8:130179264|130180880 hsa-miR-6849-5p 1 0 0
chr8:130179264|130180880 hsa-miR-2682-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr8:130179264|130180880
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence MCMVILYKILQQIHTLFGLDFINFNEIFTHLELKEAPFLLHFFRNLSSCYLCADHPMLFCVLSFLFLNFC
Nucleotide Sequence CTGTGCATGGTAATACTTTATAAGATTCTGCAGCAGATCCACACCCTTTTTGGTCTTGATTTCATTAACTTTAATGAGATATTCACACATTTGGAGCTGAAAGAGGCGCCTTTCCTTCTCCATTTCTTCCGCAATCTCAGCTCCTGTTATCTCTGTGCGGATCATCCCATGTTGTTTTGCGTGCTCTCTTTTCTCTTTCTCAATTTTTGT
CircID chr8:130179264|130180880
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MIRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQC
Nucleotide Sequence ATGATCCGCACAGAGATAACAGGAGCTGAGATTGCGGAAGAAATGGAGAAGGAAAGGCGCCTCTTTCAGCTCCAAATGTGTGAATATCTCATTAAAGTTAATGAAATCAAGACCAAAAAGGGTGTGGATCTGCTGCAGAATCTTATAAAGTATTACCATGCACAGTGC
CircID chr8:130179264|130180880
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MRLRKKWRRKGASFSSKCVNISLKLMKSRPKRVWICCRIL
Nucleotide Sequence CTGAGATTGCGGAAGAAATGGAGAAGGAAAGGCGCCTCTTTCAGCTCCAAATGTGTGAATATCTCATTAAAGTTAATGAAATCAAGACCAAAAAGGGTGTGGATCTGCTGCAGAATCTTATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr8:130179264|130180880 U2AF2 13 15 4
chr8:130179264|130180880 ELAVL1 1 3 0
chr8:130179264|130180880 CELF2 0 2 0
chr8:130179264|130180880 PRPF8 0 1 0
chr8:130179264|130180880 FMR1 0 0 1
chr8:130179264|130180880 FUS 1 1 0
chr8:130179264|130180880 DGCR8 1 0 0
chr8:130179264|130180880 NOP58 0 1 2
chr8:130179264|130180880 NOP56 0 2 0
chr8:130179264|130180880 DDX54 1 0 6
chr8:130179264|130180880 PTBP1 0 1 1
chr8:130179264|130180880 HNRNPC 1 6 0
chr8:130179264|130180880 KHSRP 0 1 0
chr8:130179264|130180880 LIN28B 0 0 2
chr8:130179264|130180880 IGF2BP2 4 5 7
chr8:130179264|130180880 TARDBP 2 4 0
chr8:130179264|130180880 RBFOX2 1 3 0
chr8:130179264|130180880 RBM47 5 0 2
chr8:130179264|130180880 TIA1 0 1 0
chr8:130179264|130180880 AGO2 1 2 1
chr8:130179264|130180880 EIF4A3 1 2 3
chr8:130179264|130180880 FBL 1 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab