CircRNA Information

General Information
circRNA Basic Information
CircID chr8:133496738|133496948
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGGCCTCTCTCGGCCATAATGGGCTCAATCCTGAACTCAGGTATGCTGATGCTCTGGGATTGTCCAGGCCACGGCACCCAAGGGGGATGGGGCTGTTTTTCCCAAATACCACCCCTCTTCCGAGTTCTTGGCCCCAGGAGCCCTTCTTTTTTAACAACTCACAAATCTATGTGAGCAAAATAAAAACAGAAAACAAAGTCAGAGAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:133496738|133496948 hsa-miR-376c-5p 0 0 1
chr8:133496738|133496948 hsa-miR-376c-3p 0 0 1
chr8:133496738|133496948 hsa-miR-345-5p 0 0 1
chr8:133496738|133496948 hsa-miR-345-3p 0 0 1
chr8:133496738|133496948 hsa-miR-571 0 0 1
chr8:133496738|133496948 hsa-miR-608 1 1 1
chr8:133496738|133496948 hsa-miR-758-5p 0 0 1
chr8:133496738|133496948 hsa-miR-758-3p 0 0 1
chr8:133496738|133496948 hsa-miR-1178-5p 0 0 1
chr8:133496738|133496948 hsa-miR-1178-3p 0 0 1
chr8:133496738|133496948 hsa-miR-1204 0 1 1
chr8:133496738|133496948 hsa-miR-1291 0 0 1
chr8:133496738|133496948 hsa-miR-1293 0 0 1
chr8:133496738|133496948 hsa-miR-1262 0 0 1
chr8:133496738|133496948 hsa-miR-1225-3p 0 0 1
chr8:133496738|133496948 hsa-miR-1233 0 0 1
chr8:133496738|133496948 hsa-miR-1254 0 0 1
chr8:133496738|133496948 hsa-miR-219-1-3p 0 0 1
chr8:133496738|133496948 hsa-miR-3154 0 1 0
chr8:133496738|133496948 hsa-miR-4462 1 0 0
chr8:133496738|133496948 hsa-miR-4682 1 1 0
chr8:133496738|133496948 hsa-miR-5194 0 1 0
chr8:133496738|133496948 hsa-miR-7106-5p 1 0 0
chr8:133496738|133496948 hsa-miR-1227-5p 0 1 0
chr8:133496738|133496948 hsa-miR-6746-5p 1 0 0
chr8:133496738|133496948 hsa-miR-6741-5p 0 1 0
chr8:133496738|133496948 hsa-miR-3189-5p 0 1 0
chr8:133496738|133496948 hsa-miR-6873-3p 0 1 0
chr8:133496738|133496948 hsa-miR-6817-3p 0 1 0
chr8:133496738|133496948 hsa-miR-23a-5p 1 1 0
chr8:133496738|133496948 hsa-miR-6782-5p 1 0 0
chr8:133496738|133496948 hsa-miR-1343-3p 0 1 0
chr8:133496738|133496948 hsa-miR-6852-5p 0 1 0
chr8:133496738|133496948 hsa-miR-4787-5p 1 0 0
chr8:133496738|133496948 hsa-miR-3189-3p 0 1 0
chr8:133496738|133496948 hsa-miR-6856-3p 0 1 0
chr8:133496738|133496948 hsa-miR-6729-3p 0 1 0
chr8:133496738|133496948 hsa-miR-6812-5p 0 1 0
chr8:133496738|133496948 hsa-miR-6737-5p 1 0 0
chr8:133496738|133496948 hsa-miR-6803-5p 1 0 0
chr8:133496738|133496948 hsa-miR-4649-5p 1 0 0
chr8:133496738|133496948 hsa-miR-6858-5p 1 0 0
chr8:133496738|133496948 hsa-miR-3116 0 1 0
chr8:133496738|133496948 hsa-miR-6791-5p 1 0 0
chr8:133496738|133496948 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:133496738|133496948
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MGLSRPRHPRGMGLFFPNTTPLPSSWPQEPFFFNNSQIYVSKIKTENKVREN
Nucleotide Sequence CTGGGATTGTCCAGGCCACGGCACCCAAGGGGGATGGGGCTGTTTTTCCCAAATACCACCCCTCTTCCGAGTTCTTGGCCCCAGGAGCCCTTCTTTTTTAACAACTCACAAATCTATGTGAGCAAAATAAAAACAGAAAACAAAGTCAGAGAGAAC
CircID chr8:133496738|133496948
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MGSILNSGMLMLWDCPGHGTQGGWGCFSQIPPLFRVLGPRSPSFLTTHKSM
Nucleotide Sequence ATGGGCTCAATCCTGAACTCAGGTATGCTGATGCTCTGGGATTGTCCAGGCCACGGCACCCAAGGGGGATGGGGCTGTTTTTCCCAAATACCACCCCTCTTCCGAGTTCTTGGCCCCAGGAGCCCTTCTTTTTTAACAACTCACAAATCTATGTGA
CircID chr8:133496738|133496948
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MGPRTRKRGGIWEKQPHPPWVPWPGQSQSISIPEFRIEPIMAERGP
Nucleotide Sequence CTGGGGCCAAGAACTCGGAAGAGGGGTGGTATTTGGGAAAAACAGCCCCATCCCCCTTGGGTGCCGTGGCCTGGACAATCCCAGAGCATCAGCATACCTGAGTTCAGGATTGAGCCCATTATGGCCGAGAGAGGCCCT
CircID chr8:133496738|133496948
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MLKKKGSWGQELGRGVVFGKNSPIPLGCRGLDNPRASAYLSSGLSPLWPREAL
Nucleotide Sequence TTGTTAAAAAAGAAGGGCTCCTGGGGCCAAGAACTCGGAAGAGGGGTGGTATTTGGGAAAAACAGCCCCATCCCCCTTGGGTGCCGTGGCCTGGACAATCCCAGAGCATCAGCATACCTGAGTTCAGGATTGAGCCCATTATGGCCGAGAGAGGCCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab