CircRNA Information

General Information
circRNA Basic Information
CircID chr8:133883228|133883395
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTGCCAACCTTTGCTCTCACAGGGCCTTGGACAGGAGACAGCCTCTCCAAGGAATGCTGCATCAGCAAGGCCACACACCATCCTTGGACACATTATCCTGGGCACAGAGAAGGATGGTTTGGTGAATGATAAAGCACGAGCTTTGGAGGAAGCACAAAAAGCCTGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:133883228|133883395 hsa-miR-107 0 0 1
chr8:133883228|133883395 hsa-miR-197-5p 0 0 1
chr8:133883228|133883395 hsa-miR-197-3p 0 0 1
chr8:133883228|133883395 hsa-miR-185-5p 0 0 1
chr8:133883228|133883395 hsa-miR-185-3p 0 0 1
chr8:133883228|133883395 hsa-miR-484 0 0 1
chr8:133883228|133883395 hsa-miR-432-5p 0 0 1
chr8:133883228|133883395 hsa-miR-432-3p 0 0 1
chr8:133883228|133883395 hsa-miR-620 0 0 1
chr8:133883228|133883395 hsa-miR-626 0 0 1
chr8:133883228|133883395 hsa-miR-636 0 0 1
chr8:133883228|133883395 hsa-miR-942-5p 0 0 1
chr8:133883228|133883395 hsa-miR-942-3p 0 0 1
chr8:133883228|133883395 hsa-miR-1179 0 0 1
chr8:133883228|133883395 hsa-miR-1237-5p 0 0 1
chr8:133883228|133883395 hsa-miR-1237-3p 0 0 1
chr8:133883228|133883395 hsa-miR-663b 0 0 1
chr8:133883228|133883395 hsa-miR-1291 0 0 1
chr8:133883228|133883395 hsa-miR-1248 0 0 1
chr8:133883228|133883395 hsa-miR-1270 0 0 1
chr8:133883228|133883395 hsa-miR-485-5p 0 0 1
chr8:133883228|133883395 hsa-miR-146b-3p 0 0 1
chr8:133883228|133883395 hsa-miR-502-5p 0 0 1
chr8:133883228|133883395 hsa-miR-628-5p 0 0 1
chr8:133883228|133883395 hsa-miR-1207-5p 0 0 1
chr8:133883228|133883395 hsa-miR-516a-3p 0 0 1
chr8:133883228|133883395 hsa-miR-103 0 0 1
chr8:133883228|133883395 hsa-miR-644 0 0 1
chr8:133883228|133883395 hsa-miR-218 0 0 1
chr8:133883228|133883395 hsa-miR-147 0 0 1
chr8:133883228|133883395 hsa-miR-3911 1 0 0
chr8:133883228|133883395 hsa-miR-139-3p 1 0 0
chr8:133883228|133883395 hsa-miR-5008-5p 1 0 0
chr8:133883228|133883395 hsa-miR-3944-3p 1 0 0
chr8:133883228|133883395 hsa-miR-345-5p 1 0 0
chr8:133883228|133883395 hsa-miR-6836-5p 1 0 0
chr8:133883228|133883395 hsa-miR-4685-5p 1 0 0
chr8:133883228|133883395 hsa-miR-5008-3p 1 0 0
chr8:133883228|133883395 hsa-miR-6837-5p 1 0 0
chr8:133883228|133883395 hsa-miR-330-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:133883228|133883395
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MDRRQPLQGMLHQQGHTPSLDTLSWAQRRMVW
Nucleotide Sequence TTGGACAGGAGACAGCCTCTCCAAGGAATGCTGCATCAGCAAGGCCACACACCATCCTTGGACACATTATCCTGGGCACAGAGAAGGATGGTTTGGTGA
CircID chr8:133883228|133883395
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence LPTFALTGPWTGDSLSKECCISKATHHPWTHYPGHREGWFGE
Nucleotide Sequence CTGCCAACCTTTGCTCTCACAGGGCCTTGGACAGGAGACAGCCTCTCCAAGGAATGCTGCATCAGCAAGGCCACACACCATCCTTGGACACATTATCCTGGGCACAGAGAAGGATGGTTTGGTGAATGA
CircID chr8:133883228|133883395
ORF Type ORF3
Protein Length 51
Nucleotide Length 156
Protein Sequence MLSQGLGQETASPRNAASARPHTILGHIILGTEKDGLVNDKARALEEAQKA
Nucleotide Sequence TTGCTCTCACAGGGCCTTGGACAGGAGACAGCCTCTCCAAGGAATGCTGCATCAGCAAGGCCACACACCATCCTTGGACACATTATCCTGGGCACAGAGAAGGATGGTTTGGTGAATGATAAAGCACGAGCTTTGGAGGAAGCACAAAAAGCCTGA
CircID chr8:133883228|133883395
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MCFLQSSCFIIHQTILLCAQDNVSKDGVWPC
Nucleotide Sequence TTGTGCTTCCTCCAAAGCTCGTGCTTTATCATTCACCAAACCATCCTTCTCTGTGCCCAGGATAATGTGTCCAAGGATGGTGTGTGGCCTTGCTGA
CircID chr8:133883228|133883395
ORF Type ORF5
Protein Length 31
Nucleotide Length 93
Protein Sequence MCPRMVCGLADAAFLGEAVSCPRPCESKGWQ
Nucleotide Sequence ATGTGTCCAAGGATGGTGTGTGGCCTTGCTGATGCAGCATTCCTTGGAGAGGCTGTCTCCTGTCCAAGGCCCTGTGAGAGCAAAGGTTGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab